CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjT46I09.60.nd
(
Lotus japonicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
LjT46I09.60.nd
T052176_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DYT1
M02654_2.00
Arabidopsis thaliana
TCACGTGWYTBRYK
MRYVARWCACGTGA
SELEX
Mathelier et al.(2014)
MA0580.1
0.855
0.735
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT46I09.60.nd
bHLH
42
90
KSKNLEYERKRREKLSTRLLMLRSLVPIVTNMNKATIIDDAITYIKELQ
Links
Other
bHLH
family TFs
Other
Lotus japonicus
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr4.CM1616.440.nc
Lotus japonicus
chr4.CM1616.440.nc
I
0.914
GLYMA15G06950
Glycine max
GLYMA15G06950
I
0.894
orange1.1g042649m.g
Citrus sinensis
orange1.1g042649m.g
I
0.894
Ca_22008
Cicer arietinum
Ca_22008
N
0.870
29842.m003700
Ricinus communis
29842.m003700
N
0.870
Gorai.011G019900
Gossypium raimondii
Gorai.011G019900
N
0.870
MTR_4g091910
Medicago truncatula
MTR_4g091910
I
0.867
GLYMA13G32370
Glycine max
GLYMA13G32370
I
0.867
Bostr.10689s0082
Boechera stricta
Bostr.10689s0082
I
0.855
Bo3g162600
Brassica oleracea
Bo3g162600
I
0.855
Thhalv10027186m.g
Eutrema salsugineum
Thhalv10027186m.g
I
0.855
DYT1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7001824
I
0.855
Bra013519
Brassica rapa
Bra013519
I
0.855
DYT1
Arabidopsis thaliana
AT4G21330
D
0.855
GLYMA15G06960
Glycine max
GLYMA15G06960
N
0.854
PRUPE_ppa021593mg
Prunus persica
PRUPE_ppa021593mg
N
0.840
cassava15938.m1
Manihot esculenta
cassava15938.m1
N
0.840
cassava21844.m1
Manihot esculenta
cassava21844.m1
N
0.840