PDK_20s1322841g001 (Phoenix dactylifera)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 PDK_20s1322841g001 T052224_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.853 0.843
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.853 0.843
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.853 0.843
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.843 0.863
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.843 0.863
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.843 0.863
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.843 0.863
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.843 0.863
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.843 0.843
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.840 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1322841g001 bHLH 40 90

Links

Other bHLH family TFs
Other Phoenix dactylifera TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.001G234900 Gossypium raimondii Gorai.001G234900 I 0.856
Lus10011899.g Linum usitatissimum Lus10011899.g I 0.856
Gorai.001G183400 Gossypium raimondii Gorai.001G183400 I 0.856
Ca_07691 Cicer arietinum Ca_07691 I 0.856
Ca_12298 Cicer arietinum Ca_12298 I 0.856
VIT_12s0028g01110 Vitis vinifera VIT_12s0028g01110 I 0.856
Lus10022833.g Linum usitatissimum Lus10022833.g I 0.856
orange1.1g014090m.g Citrus sinensis orange1.1g014090m.g I 0.856
GLYMA03G32747 Glycine max GLYMA03G32747 I 0.856
MDP0000289642 Malus domestica MDP0000289642 I 0.856
GLYMA13G19250 Glycine max GLYMA13G19250 I 0.856
gene08411-v1.0-hybrid Fragaria vesca gene08411-v1.0-hybrid I 0.856
evm.TU.supercontig_8.199 Carica papaya evm.TU.supercontig_8.199 I 0.856
30204.m001816 Ricinus communis 30204.m001816 I 0.856
mgf008404m Mimulus guttatus mgf008404m I 0.856
cassava2968.m1 Manihot esculenta cassava2968.m1 I 0.856
cassava34241.m1 Manihot esculenta cassava34241.m1 I 0.856
Aquca_026_00376 Aquilegia coerulea Aquca_026_00376 I 0.856
Aquca_034_00180 Aquilegia coerulea Aquca_034_00180 I 0.856
Eucgr.K03592 Eucalyptus grandis Eucgr.K03592 I 0.856
Ciclev10019585m.g Citrus clementina Ciclev10019585m.g I 0.856
MTR_1g069155 Medicago truncatula MTR_1g069155 I 0.856
MTR_7g099540 Medicago truncatula MTR_7g099540 I 0.856
PGSC0003DMG400014705 Solanum tuberosum PGSC0003DMG400014705 I 0.856
GLYMA10G04890 Glycine max GLYMA10G04890 I 0.856
SapurV1A.0937s0140 Salix purpurea SapurV1A.0937s0140 I 0.856
SapurV1A.0289s0130 Salix purpurea SapurV1A.0289s0130 I 0.856
Solyc06g008030.2 Solanum lycopersicum Solyc06g008030.2 I 0.856
PK06970.1 Cannabis sativa PK06970.1 I 0.856
PRUPE_ppa004070mg Prunus persica PRUPE_ppa004070mg I 0.856
POPTR_0002s25410 Populus trichocarpa POPTR_0002s25410 I 0.856
TCM_003125 Theobroma cacao TCM_003125 I 0.856
Traes_2AL_892B4448E Triticum aestivum Traes_2AL_892B4448E I 0.854
F775_01586 Aegilops tauschii F775_01586 I 0.854
BRADI1G58230 Brachypodium distachyon BRADI1G58230 I 0.854
Traes_2BL_C594B831F Triticum aestivum Traes_2BL_C594B831F I 0.854
TRIUR3_34817 Triticum urartu TRIUR3_34817 I 0.854
Traes_2DL_A84C58DC2 Triticum aestivum Traes_2DL_A84C58DC2 I 0.854
MLOC_77331 Hordeum vulgare MLOC_77331 I 0.854
Bostr.7903s0150 Boechera stricta Bostr.7903s0150 I 0.853
Cagra.0338s0008 Capsella grandiflora Cagra.0338s0008 I 0.853
Bo7g003890 Brassica oleracea Bo7g003890 I 0.853
Carubv10013621m.g Capsella rubella Carubv10013621m.g I 0.853
PIL5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3002562 I 0.853
PIF1 Arabidopsis thaliana AT2G20180 D 0.853
Thhalv10001974m.g Eutrema salsugineum Thhalv10001974m.g I 0.853
AMTR_s00039p00032460 Amborella trichopoda AMTR_s00039p00032460 I 0.853
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I 0.844
GLYMA02G19000 Glycine max GLYMA02G19000 I 0.844
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I 0.844
Pm003265 Prunus mume Pm003265 I 0.843
Si035819m.g Setaria italica Si035819m.g I 0.843
Si035110m.g Setaria italica Si035110m.g I 0.843
Si022196m.g Setaria italica Si022196m.g I 0.843
cassava17680.valid.m1 Manihot esculenta cassava17680.valid.m1 I 0.843
cassava17681.valid.m1 Manihot esculenta cassava17681.valid.m1 I 0.843
Si000698m.g Setaria italica Si000698m.g I 0.843
cassava12867.valid.m1 Manihot esculenta cassava12867.valid.m1 I 0.843
Si021472m.g Setaria italica Si021472m.g I 0.843
Pm014785 Prunus mume Pm014785 I 0.843
30128.m008988 Ricinus communis 30128.m008988 I 0.843
Solyc01g102300.2 Solanum lycopersicum Solyc01g102300.2 I 0.843
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I 0.843
Solyc09g063010.2 Solanum lycopersicum Solyc09g063010.2 I 0.843
Cucsa.078700 Cucumis sativus Cucsa.078700 I 0.843
TRIUR3_14996 Triticum urartu TRIUR3_14996 I 0.843
Traes_1BS_D1FCBFBE8 Triticum aestivum Traes_1BS_D1FCBFBE8 I 0.843
Traes_1DS_55E91A134 Triticum aestivum Traes_1DS_55E91A134 I 0.843
Traes_5BL_054434680 Triticum aestivum Traes_5BL_054434680 I 0.843
Traes_5DL_026913547 Triticum aestivum Traes_5DL_026913547 I 0.843
TCM_026851 Theobroma cacao TCM_026851 I 0.843
PIF3 Vitis vinifera VIT_14s0060g00260 I 0.843
Cla002793 Citrullus lanatus Cla002793 I 0.843
Cla015231 Citrullus lanatus Cla015231 I 0.843
Ca_21576 Cicer arietinum Ca_21576 I 0.843
TCM_001913 Theobroma cacao TCM_001913 I 0.843
Ca_03591 Cicer arietinum Ca_03591 I 0.843
Cla020302 Citrullus lanatus Cla020302 I 0.843
Cagra.4395s0138 Capsella grandiflora Cagra.4395s0138 I 0.843
Pavir.Ib04022 Panicum virgatum Pavir.Ib04022 I 0.843
Pavir.J08053 Panicum virgatum Pavir.J08053 I 0.843
Pavir.J12143 Panicum virgatum Pavir.J12143 I 0.843
SapurV1A.0076s0230 Salix purpurea SapurV1A.0076s0230 I 0.843
Pavir.Ia01219 Panicum virgatum Pavir.Ia01219 I 0.843
Pavir.Ia00490 Panicum virgatum Pavir.Ia00490 I 0.843
orange1.1g007797m.g Citrus sinensis orange1.1g007797m.g I 0.843
Pavir.Ca01237 Panicum virgatum Pavir.Ca01237 I 0.843
Pavir.Ea01048 Panicum virgatum Pavir.Ea01048 I 0.843
SapurV1A.0442s0220 Salix purpurea SapurV1A.0442s0220 I 0.843
Thhalv10007343m.g Eutrema salsugineum Thhalv10007343m.g I 0.843
PDK_20s1451901g001 Phoenix dactylifera PDK_20s1451901g001 I 0.843
PDK_20s1486002g002 Phoenix dactylifera PDK_20s1486002g002 I 0.843
PDK_20s1667271g001 Phoenix dactylifera PDK_20s1667271g001 I 0.843
PDK_20s1775531g001 Phoenix dactylifera PDK_20s1775531g001 I 0.843
PDK_20s1306831g002 Phoenix dactylifera PDK_20s1306831g002 I 0.843
LjSGA_030731.1 Lotus japonicus LjSGA_030731.1 I 0.843
PK05451.1 Cannabis sativa PK05451.1 D 0.843
PK12073.1 Cannabis sativa PK12073.1 I 0.843
chr5.CM0048.80.nd Lotus japonicus chr5.CM0048.80.nd I 0.843
orange1.1g006040m.g Citrus sinensis orange1.1g006040m.g I 0.843
MDP0000290263 Malus domestica MDP0000290263 I 0.843
mgf017958m Mimulus guttatus mgf017958m I 0.843
Aquca_003_00259 Aquilegia coerulea Aquca_003_00259 I 0.843
Bostr.25494s0011 Boechera stricta Bostr.25494s0011 I 0.843
Carubv10008815m.g Capsella rubella Carubv10008815m.g I 0.843
mgf009653m Mimulus guttatus mgf009653m I 0.843
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I 0.843
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I 0.843
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I 0.843
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I 0.843
Ciclev10027890m.g Citrus clementina Ciclev10027890m.g I 0.843
Ciclev10031028m.g Citrus clementina Ciclev10031028m.g I 0.843
Lus10020727.g Linum usitatissimum Lus10020727.g I 0.843
Lus10029805.g Linum usitatissimum Lus10029805.g I 0.843
MDP0000198404 Malus domestica MDP0000198404 I 0.843
MDP0000254650 Malus domestica MDP0000254650 I 0.843
Gorai.007G309400 Gossypium raimondii Gorai.007G309400 I 0.843
Gorai.006G008800 Gossypium raimondii Gorai.006G008800 I 0.843
Eucgr.B01825 Eucalyptus grandis Eucgr.B01825 I 0.843
gene22963-v1.0-hybrid Fragaria vesca gene22963-v1.0-hybrid I 0.843
gene28785-v1.0-hybrid Fragaria vesca gene28785-v1.0-hybrid I 0.843
Cucsa.090320 Cucumis sativus Cucsa.090320 I 0.843
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I 0.843
GSMUA_Achr5G18390_001 Musa acuminata GSMUA_Achr5G18390_001 I 0.843
GSMUA_Achr5G02280_001 Musa acuminata GSMUA_Achr5G02280_001 I 0.843
GSMUA_Achr6G30080_001 Musa acuminata GSMUA_Achr6G30080_001 I 0.843
GSMUA_Achr6G31370_001 Musa acuminata GSMUA_Achr6G31370_001 I 0.843
LPERR01G10950 Leersia perrieri LPERR01G10950 I 0.843
GSMUA_Achr4G31770_001 Musa acuminata GSMUA_Achr4G31770_001 I 0.843
GRMZM5G865967 Zea mays GRMZM5G865967 I 0.843
GRMZM2G065374 Zea mays GRMZM2G065374 I 0.843
GRMZM2G115960 Zea mays GRMZM2G115960 I 0.843
GRMZM2G165042 Zea mays GRMZM2G165042 I 0.843
GRMZM2G387528 Zea mays GRMZM2G387528 I 0.843
LPERR03G22450 Leersia perrieri LPERR03G22450 I 0.843
LPERR05G02370 Leersia perrieri LPERR05G02370 I 0.843
OB05G12600 Oryza brachyantha OB05G12600 I 0.843
OB03G43250 Oryza brachyantha OB03G43250 I 0.843
OBART01G11950 Oryza barthii OBART01G11950 I 0.843
OBART03G36360 Oryza barthii OBART03G36360 I 0.843
OBART12G18470 Oryza barthii OBART12G18470 I 0.843
OB01G21830 Oryza brachyantha OB01G21830 I 0.843
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I 0.843
LPERR12G15470 Leersia perrieri LPERR12G15470 I 0.843
MLOC_68598 Hordeum vulgare MLOC_68598 I 0.843
MLOC_7883 Hordeum vulgare MLOC_7883 I 0.843
MTR_1g084980 Medicago truncatula MTR_1g084980 I 0.843
GLYMA20G22291 Glycine max GLYMA20G22291 I 0.843
GLYMA19G41261 Glycine max GLYMA19G41261 I 0.843
BGIOSGA037775 Oryza indica BGIOSGA037775 I 0.843
BGIOSGA037772 Oryza indica BGIOSGA037772 I 0.843
Bo5g009910 Brassica oleracea Bo5g009910 I 0.843
Bo8g111120 Brassica oleracea Bo8g111120 I 0.843
Bra020017 Brassica rapa Bra020017 I 0.843
BGIOSGA019157 Oryza indica BGIOSGA019157 I 0.843
BGIOSGA013672 Oryza indica BGIOSGA013672 I 0.843
AMTR_s00045p00141060 Amborella trichopoda AMTR_s00045p00141060 I 0.843
PIF3 Arabidopsis thaliana AT1G09530 D 0.843
BGIOSGA001870 Oryza indica BGIOSGA001870 I 0.843
BGIOSGA013197 Oryza indica BGIOSGA013197 I 0.843
Bra031668 Brassica rapa Bra031668 I 0.843
BRADI1G06670 Brachypodium distachyon BRADI1G06670 I 0.843
GLYMA08G41620 Glycine max GLYMA08G41620 I 0.843
GLYMA03G38675 Glycine max GLYMA03G38675 I 0.843
GLYMA10G28290 Glycine max GLYMA10G28290 I 0.843
GLYMA14G03600 Glycine max GLYMA14G03600 I 0.843
GLYMA18G14530 Glycine max GLYMA18G14530 I 0.843
GLYMA02G45150 Glycine max GLYMA02G45150 I 0.843
PIF3 Arabidopsis lyrata fgenesh2_kg.1__1002__AT1G09530.2 I 0.843
BRADI1G13980 Brachypodium distachyon BRADI1G13980 I 0.843
BRADI2G11100 Brachypodium distachyon BRADI2G11100 I 0.843
F775_16112 Aegilops tauschii F775_16112 I 0.843
F775_31861 Aegilops tauschii F775_31861 I 0.843
OGLUM01G13370 Oryza glumaepatula OGLUM01G13370 I 0.843
MTR_3g449770 Medicago truncatula MTR_3g449770 I 0.843
ORUFI12G20600 Oryza rufipogon ORUFI12G20600 I 0.843
ORUFI05G02750 Oryza rufipogon ORUFI05G02750 I 0.843
OGLUM03G27730 Oryza glumaepatula OGLUM03G27730 I 0.843
OS03G0782500 Oryza sativa OS03G0782500 I 0.843
APG Oryza sativa OS05G0139100 I 0.843
ORUFI03G37840 Oryza rufipogon ORUFI03G37840 I 0.843
ORUFI03G28150 Oryza rufipogon ORUFI03G28150 I 0.843
OPUNC12G16660 Oryza punctata OPUNC12G16660 I 0.843
ORGLA03G0333400 Oryza glaberrima ORGLA03G0333400 I 0.843
ORGLA08G0194500 Oryza glaberrima ORGLA08G0194500 I 0.843
ORGLA12G0157200 Oryza glaberrima ORGLA12G0157200 I 0.843
OS12G0610200 Oryza sativa OS12G0610200 I 0.843
PGSC0003DMG400018280 Solanum tuberosum PGSC0003DMG400018280 I 0.843
Sb01g006190 Sorghum bicolor Sb01g006190 I 0.843
PRUPE_ppa017228mg Prunus persica PRUPE_ppa017228mg I 0.843
Sb01g013843 Sorghum bicolor Sb01g013843 I 0.843
Sb08g021000 Sorghum bicolor Sb08g021000 I 0.843
Sb09g003090 Sorghum bicolor Sb09g003090 I 0.843
PRUPE_ppa001899mg Prunus persica PRUPE_ppa001899mg I 0.843
POPTR_0013s00310 Populus trichocarpa POPTR_0013s00310 I 0.843
PGSC0003DMG400018950 Solanum tuberosum PGSC0003DMG400018950 I 0.843
POPTR_0002s05630 Populus trichocarpa POPTR_0002s05630 I 0.843
POPTR_0005s00360 Populus trichocarpa POPTR_0005s00360 I 0.843
POPTR_0005s22870 Populus trichocarpa POPTR_0005s22870 I 0.843
OPUNC05G02500 Oryza punctata OPUNC05G02500 I 0.843
OS01G0286100 Oryza sativa OS01G0286100 I 0.843
OMERI12G13210 Oryza meridionalis OMERI12G13210 I 0.843
OGLUM03G36070 Oryza glumaepatula OGLUM03G36070 I 0.843
ONIVA03G28270 Oryza nivara ONIVA03G28270 I 0.843
OMERI05G02570 Oryza meridionalis OMERI05G02570 I 0.843
OGLUM05G02640 Oryza glumaepatula OGLUM05G02640 I 0.843
OGLUM12G20110 Oryza glumaepatula OGLUM12G20110 I 0.843
OLONG_002577 Oryza longistaminata OLONG_002577 I 0.843
ONIVA05G02540 Oryza nivara ONIVA05G02540 I 0.843
ONIVA01G14150 Oryza nivara ONIVA01G14150 I 0.843
OPUNC01G11630 Oryza punctata OPUNC01G11630 I 0.843
ONIVA10G12820 Oryza nivara ONIVA10G12820 I 0.843
ONIVA12G17350 Oryza nivara ONIVA12G17350 I 0.843
OPUNC03G24740 Oryza punctata OPUNC03G24740 I 0.843
OPUNC03G33340 Oryza punctata OPUNC03G33340 I 0.843
OPUNC07G02800 Oryza punctata OPUNC07G02800 I 0.841
Cucsa.113040 Cucumis sativus Cucsa.113040 I 0.841
Solyc07g043580.2 Solanum lycopersicum Solyc07g043580.2 I 0.841
Cla018863 Citrullus lanatus Cla018863 I 0.841
Si030028m.g Setaria italica Si030028m.g I 0.841
Sb02g002760 Sorghum bicolor Sb02g002760 I 0.841
F775_17713 Aegilops tauschii F775_17713 I 0.841
Traes_5AS_EBCEA6601 Triticum aestivum Traes_5AS_EBCEA6601 I 0.841
Pavir.Bb00256 Panicum virgatum Pavir.Bb00256 I 0.841
MLOC_71592 Hordeum vulgare MLOC_71592 I 0.841
Pavir.Ba03888 Panicum virgatum Pavir.Ba03888 I 0.841
PGSC0003DMG401015926 Solanum tuberosum PGSC0003DMG401015926 I 0.841
Bo3g036300 Brassica oleracea Bo3g036300 I 0.840
Thhalv10016715m.g Eutrema salsugineum Thhalv10016715m.g I 0.840
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I 0.840
Thhalv10005929m.g Eutrema salsugineum Thhalv10005929m.g I 0.840
PIL6 Arabidopsis lyrata scaffold_503108.1 I 0.840
PIF4 Arabidopsis thaliana AT2G43010 D 0.840
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I 0.840
Bostr.25993s0478 Boechera stricta Bostr.25993s0478 I 0.840
Cagra.0202s0011 Capsella grandiflora Cagra.0202s0011 I 0.840
Cagra.0216s0013 Capsella grandiflora Cagra.0216s0013 I 0.840
Carubv10017267m.g Capsella rubella Carubv10017267m.g I 0.840
Carubv10023275m.g Capsella rubella Carubv10023275m.g I 0.840
PIF4 Arabidopsis lyrata fgenesh2_kg.4__2461__AT2G43010.2 I 0.840
Pavir.Cb00224 Panicum virgatum Pavir.Cb00224 I 0.840
Bra000283 Brassica rapa Bra000283 I 0.840
Bra007430 Brassica rapa Bra007430 I 0.840
MTR_7g111320 Medicago truncatula MTR_7g111320 I 0.840
Bo8g093060 Brassica oleracea Bo8g093060 I 0.840
Bostr.20903s0139 Boechera stricta Bostr.20903s0139 I 0.840
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I 0.838