TGA1 (Arabidopsis lyrata)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Al_scaffold_0008_3070 T056736_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TGA1
M01788_2.00
Arabidopsis thaliana
NVTGACGHNN

NNDCGTCABN
PBM
Weirauch et al.(2014)
pTH7231
0.798 1.000
TGA1
M01134_2.00
Arabidopsis thaliana
NVTKACGHNN

NNDCGTMABN
PBM
Lambert et al.(2019)
pTH7599
0.798 1.000
TGA1
M06793_2.00
Arabidopsis thaliana
HNDVTGACGTCAKCD

HGMTGACGTCABHND
Dap-seq
OMalley et al.(2016)
TGA1_colamp_a
0.798 1.000
TGA1
M06794_2.00
Arabidopsis thaliana
DRTGACGTCAKCDDH

DHHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA1_col
0.798 1.000
TGA1
M02657_2.00
Arabidopsis thaliana
HNACGTCABSV

BSVTGACGTND
SELEX
Mathelier et al.(2014)
MA0588.1
0.798 1.000
TGA4
M01786_2.00
Arabidopsis thaliana
RVTKACGTND

HNACGTMABY
PBM
Weirauch et al.(2014)
pTH8278
0.798 0.959
TGA4
M06788_2.00
Arabidopsis thaliana
TSACGTCAKCD

HGMTGACGTSA
Dap-seq
OMalley et al.(2016)
TGA4_col_a
0.798 0.959
TGA4
M06789_2.00
Arabidopsis thaliana
DRTGACGTCAKCDNH

DNHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA4_colamp_a
0.798 0.959
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_3070 bZIP 80 128

Links

Other bZIP family TFs
Other Arabidopsis lyrata TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action