CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ABF2
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT1G45249
T056867_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
(Direct)
(Direct)
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0471950
M10047_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.812
0.694
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN
NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.805
0.742
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.805
0.742
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.805
0.742
ABF4
M09911_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.805
0.742
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
0.794
0.661
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
0.794
0.661
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
0.794
0.661
ABF1
M09906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
0.794
0.661
ABF1
M09907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
0.794
0.661
ABF1
M09908_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
0.794
0.661
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT
ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.788
0.597
ABF3
M09912_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.788
0.597
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.786
0.565
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.786
0.565
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.786
0.565
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.786
0.565
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.786
0.565
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01771_2.00
bZIP
76
137
VERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEMQKNQETEMR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G45249.10
bZIP
336
362
VERRQRRMIKNRESAARSRARKQIFTA
AT1G45249.1
bZIP
336
397
VERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEMQKNQETEMR
AT1G45249.2
bZIP
336
361
VERRQRRMIKNRESAARSRARKQVNL
AT1G45249.3
bZIP
336
408
VERRQRRMIKNRESAARSRARKQIFTADQTIYWNAYTVELEAEVAKLKEENDELQRKQARIMEMQKNQETEMR
AT1G45249.4
bZIP
336
361
VERRQRRMIKNRESAARSRARKQVNL
AT1G45249.5
bZIP
336
362
VERRQRRMIKNRESAARSRARKQIFTA
AT1G45249.6
bZIP
351
412
VERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEMQKNQETEMR
AT1G45249.7
bZIP
351
412
VERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEMQKNQETEMR
AT1G45249.8
bZIP
336
361
VERRQRRMIKNRESAARSRARKQVNL
AT1G45249.9
bZIP
336
361
VERRQRRMIKNRESAARSRARKQVNL
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
367 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy