CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ABF1
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT1G49720
T056868_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
(Direct)
(Direct)
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
(Direct)
(Direct)
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
(Direct)
(Direct)
ABF1
M09906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
(Direct)
(Direct)
ABF1
M09907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
(Direct)
(Direct)
ABF1
M09908_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.822
0.774
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN
NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.803
0.702
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT
ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.798
0.667
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.822
0.774
ABF3
M09912_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.798
0.667
ABF4
M09911_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.822
0.774
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.793
0.702
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.793
0.702
OS08G0471950
M10047_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.790
0.629
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01772_2.00
bZIP
51
113
VERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEFSK
M01773_2.00
bZIP
53
115
VERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEFSK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G49720.1
bZIP
311
373
VERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEFSK
AT1G49720.2
bZIP
311
367
VERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSE
AT1G49720.3
bZIP
311
373
VERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSELKEFSK
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
206 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy