ABF1 (Arabidopsis thaliana)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 AT1G49720 T056868_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN

NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
(Direct) (Direct)
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN

NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
(Direct) (Direct)
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC

GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
(Direct) (Direct)
ABF1
M09906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
(Direct) (Direct)
ABF1
M09907_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
(Direct) (Direct)
ABF1
M09908_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN

NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.803 0.702
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN

NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.822 0.774
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT

ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.798 0.667
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN

NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.822 0.774
ABF3
M09912_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.798 0.667
ABF4
M09911_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.822 0.774
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN

NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.793 0.702
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH

DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.794 0.661
OS08G0471950
M10047_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.790 0.684
For this family, TFs with SR scores > 0.782 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01772_2.00 bZIP 51 113
M01773_2.00 bZIP 53 115

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G49720.1 bZIP 311 373
AT1G49720.2 bZIP 311 367
AT1G49720.3 bZIP 311 373

Links

Other bZIP family TFs
Other Arabidopsis thaliana TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS08G0471950 Oryza sativa OS08G0471950 D 0.790
ABF3 Arabidopsis thaliana AT4G34000 D 0.814
ABF4 Arabidopsis thaliana AT3G19290 D 0.822
ABI5 Arabidopsis thaliana AT2G36270 D 0.788
ABF2 Arabidopsis thaliana AT1G45249 D 0.794
PK18009.1 Cannabis sativa PK18009.1 D 0.820
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.792
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.806
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.811
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.811
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.844
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.811
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.812
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.784
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.812
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.784
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.799
mgf002047m Mimulus guttatus mgf002047m I 0.815
mgf007524m Mimulus guttatus mgf007524m I 0.815
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.814
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.794
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.814
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.812
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.824
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.782
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I 0.782
mgf020824m Mimulus guttatus mgf020824m I 0.807
mgf015092m Mimulus guttatus mgf015092m I 0.783
mgf014602m Mimulus guttatus mgf014602m I 0.815
30170.m013868 Ricinus communis 30170.m013868 I 0.812
29801.m003176 Ricinus communis 29801.m003176 I 0.814
29625.m000702 Ricinus communis 29625.m000702 I 0.803
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.793
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.793
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.793
TCM_033824 Theobroma cacao TCM_033824 I 0.802
TCM_007074 Theobroma cacao TCM_007074 I 0.815
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.827
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.815
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I 0.783
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.795
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.818
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.793
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.800
Pm021430 Prunus mume Pm021430 I 0.823
Pm005288 Prunus mume Pm005288 I 0.793
Pm001315 Prunus mume Pm001315 I 0.792
Cla022926 Citrullus lanatus Cla022926 I 0.799
Cla016272 Citrullus lanatus Cla016272 I 0.806
Ca_06458 Cicer arietinum Ca_06458 I 0.808
Ca_01548 Cicer arietinum Ca_01548 I 0.810
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.810
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.812
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.787
Si030114m.g Setaria italica Si030114m.g I 0.834
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.788
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.790
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.811
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.810
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.810
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.809
MDP0000701734 Malus domestica MDP0000701734 I 0.793
MDP0000296303 Malus domestica MDP0000296303 I 0.800
MDP0000248567 Malus domestica MDP0000248567 I 0.815
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.800
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.804
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.818
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.804
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.797
PK02169.1 Cannabis sativa PK02169.1 I 0.812
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.802
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.832
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.853
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.794
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.826
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.812
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.826
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.812
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.795
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.784
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.784
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.810
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.782
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.798
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.812
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.809
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.810
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.822
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.817
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.794
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.814
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.817
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.809
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.825
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.804
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.801
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.783
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.800
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.815
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.804
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.789
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.805
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.816
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.804
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.822
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.808
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.805
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.795
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.795
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.795
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.790
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.802
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.785
GLYMA10G08370 Glycine max GLYMA10G08370 I 0.785
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.798
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.810
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.800
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.791
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.800
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.798
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.793
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.820
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.797
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.802
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.795
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.809
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.798
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.803
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.791
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.810
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.814
Bo6g006970 Brassica oleracea Bo6g006970 I 0.794
Bo5g115300 Brassica oleracea Bo5g115300 I 0.832
Bo3g073080 Brassica oleracea Bo3g073080 I 0.817
Bo1g114840 Brassica oleracea Bo1g114840 I 0.806
Bo1g007700 Brassica oleracea Bo1g007700 I 0.806
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.820
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.790
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.796
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.795
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.810
Bo6g018480 Brassica oleracea Bo6g018480 I 0.818
Bo7g116570 Brassica oleracea Bo7g116570 I 0.808
Bra011485 Brassica rapa Bra011485 I 0.791
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.822
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.852
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.794
F775_32479 Aegilops tauschii F775_32479 I 0.793
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.789
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.797
Bra040260 Brassica rapa Bra040260 I 0.794
Bra037533 Brassica rapa Bra037533 I 0.832
Bra022409 Brassica rapa Bra022409 I 0.832
Bra018800 Brassica rapa Bra018800 I 0.812
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.805
Si017618m.g Setaria italica Si017618m.g I 0.790
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.827
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.810
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.826
OS09G0456200 Oryza sativa OS09G0456200 I 0.820
BZIP23 Oryza sativa OS02G0766700 I 0.796
OS01G0859300 Oryza sativa OS01G0859300 I 0.795
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.790
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.796
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.795
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.820
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.818
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.812
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.785
Si013904m.g Setaria italica Si013904m.g I 0.817
Si006889m.g Setaria italica Si006889m.g I 0.790
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.782
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.810
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.788
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.797
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.823
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.789
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.812
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.815
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.790
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.800
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.820
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.791
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.796
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.795
OBART08G17810 Oryza barthii OBART08G17810 I 0.790
OBART02G33770 Oryza barthii OBART02G33770 I 0.787
OBART01G37980 Oryza barthii OBART01G37980 I 0.795
OB09G19140 Oryza brachyantha OB09G19140 I 0.797
OB08G24950 Oryza brachyantha OB08G24950 I 0.806
OB01G46760 Oryza brachyantha OB01G46760 I 0.795
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.790
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.794
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.795
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.795
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.820
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.790
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.791
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.790
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.795
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.796
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.820
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.796
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.795
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.808