ABI5 (Arabidopsis thaliana)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 AT2G36270 T056887_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABI5
M01776_2.00		 Arabidopsis thaliana
NCACGTGKMN
NKMCACGTGN		 PBM
Weirauch et al.(2014)
pTH8104		 (Direct) (Direct)
ABI5
M06766_2.00		 Arabidopsis thaliana
DNWKVHSACGTGGCR
YGCCACGTSDBMWNH		 Dap-seq
OMalley et al.(2016)
ABI5_colamp_v3b		 (Direct) (Direct)
ABI5
M06767_2.00		 Arabidopsis thaliana
DDNDKVWSACGTGKCRNN
NNYGMCACGTSWBMHNHH		 Dap-seq
OMalley et al.(2016)
ABI5_col_v3h		 (Direct) (Direct)
ABI5
M09910_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI5_Q2		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.820 0.678
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.820 0.678
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.800 0.610
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.799 0.627
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.799 0.627
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.799 0.627
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.794 0.610
DPBF3
M01133_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Lambert et al.(2019)
pTH11531 		0.790 0.559
DPBF3
M01058_2.00 		Arabidopsis thaliana
HBACGTGKM
KMCACGTVD		 PBM
Sullivan et al.(2014)
pTH7219 		0.790 0.559
DPBF3
M01059_2.00 		Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7547 		0.790 0.559
DPBF3
M06777_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_colamp_a 		0.790 0.559
DPBF3
M06778_2.00 		Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA		 Dap-seq
OMalley et al.(2016)
AREB3_col_v31 		0.790 0.559
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.788 0.627
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.788 0.627
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.788 0.610
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.788 0.610
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.788 0.610
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.788 0.610
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.788 0.610
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.788 0.610
For this family, TFs with SR scores > 0.782 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01776_2.00 bZIP 53 103
M01776_2.00 bZIP 100 135

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G36270.1 bZIP 355 405
AT2G36270.1 bZIP 402 437
AT2G36270.2 bZIP 355 405
AT2G36270.2 bZIP 402 437
AT2G36270.3 bZIP 355 416

Links

Other bZIP family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

378 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action