GBF3 (Arabidopsis thaliana)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 AT2G46270 T056892_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3###Os DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GBF3
M01779_2.00
Arabidopsis thaliana
NBMCASSTVD

HBASSTGKVN
PBM
Weirauch et al.(2014)
pTH7328
(Direct) (Direct)
GBF3
M06770_2.00
Arabidopsis thaliana
DNHDNHSACGTGKMD

HKMCACGTSDNHDNH
Dap-seq
OMalley et al.(2016)
GBF3_colamp
(Direct) (Direct)
GBF3
M06771_2.00
Arabidopsis thaliana
DDWKVYSACGTGGCA

TGCCACGTSRBMWHH
Dap-seq
OMalley et al.(2016)
GBF3_col
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK09653.1
M01156_2.00
Cannabis sativa
NNMCASVNNN

NNNBSTGKNN
PBM
Lambert et al.(2019)
pTH10114
0.868 0.781
Q40645_ORYSA
M10050_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OSBZ8_Q6
0.854 0.750
Q41109_PHAVU
M10078_2.00
Phaseolus vulgaris Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ROM_Q2
0.854 0.781
GBF2
M01781_2.00
Arabidopsis thaliana
BMCASSNNN

NNNSSTGKV
PBM
Weirauch et al.(2014)
pTH7258
0.834 0.734
TAF1_TOBAC
M10079_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_01
0.820 0.750
TAF1_TOBAC
M10080_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_Q2
0.820 0.750
CPRF1_PETCR
M10066_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_01
0.807 0.703
CPRF1_PETCR
M10067_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_Q2
0.807 0.703
CPRF1_PETCR
M10068_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF_Q2
0.807 0.703
GBF1
M01783_2.00
Arabidopsis thaliana
HBACGTGKMN

NKMCACGTVD
PBM
Weirauch et al.(2014)
pTH7259
0.800 0.641
GBF1
M09913_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_01
0.800 0.641
GBF1
M09914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1F_Q2
0.800 0.641
GBF1
M09915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2_01
0.800 0.641
GBF1
M09916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2
0.800 0.641
For this family, TFs with SR scores > 0.782 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01779_2.00 bZIP 51 114

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G46270.1 bZIP 257 320
AT2G46270.2 bZIP 234 297
AT2G46270.3 bZIP 257 320
AT2G46270.4 bZIP 234 297

Links

Other bZIP family TFs
Other Arabidopsis thaliana TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.883
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.883
Bra004550 Brassica rapa Bra004550 I 0.883
Bo4g010410 Brassica oleracea Bo4g010410 I 0.883
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.883
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.883
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.868
PK09653.1 Cannabis sativa PK09653.1 D 0.868
30174.m008698 Ricinus communis 30174.m008698 I 0.866
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.862
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.862
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.856
Bo3g039150 Brassica oleracea Bo3g039150 I 0.855
OB05G33790 Oryza brachyantha OB05G33790 I 0.854
OBART01G25300 Oryza barthii OBART01G25300 I 0.854
OB01G34490 Oryza brachyantha OB01G34490 I 0.854
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.854
OBART05G26280 Oryza barthii OBART05G26280 I 0.854
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.854
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.854
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.854
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.854
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.854
Si022388m.g Setaria italica Si022388m.g I 0.854
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.854
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.854
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.854
Si001929m.g Setaria italica Si001929m.g I 0.854
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.854
OS01G0658900 Oryza sativa OS01G0658900 I 0.854
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.854
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.854
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.854
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.854
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.854
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.854
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.854
OS05G0569300 Oryza sativa OS05G0569300 I 0.854
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.854
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.854
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.854
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.854
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.853
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.853
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.853
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.853
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.852
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.852
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.852
TCM_005210 Theobroma cacao TCM_005210 I 0.852
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.852
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.852
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.851
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.851
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.851
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.851
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.851
F775_07803 Aegilops tauschii F775_07803 I 0.851
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.851
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.851
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.848
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.848
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.845
Cla021500 Citrullus lanatus Cla021500 I 0.842
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.842
MDP0000545420 Malus domestica MDP0000545420 I 0.840
MDP0000138052 Malus domestica MDP0000138052 I 0.840
MDP0000493795 Malus domestica MDP0000493795 I 0.840
mgf013423m Mimulus guttatus mgf013423m I 0.838
Pm018422 Prunus mume Pm018422 I 0.838
mgf003302m Mimulus guttatus mgf003302m I 0.838
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.838
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.837
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.837
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.837
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.837
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.837
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.837
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.837
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.836
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.836
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.836
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.835
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.835
GBF2 Arabidopsis thaliana AT4G01120 D 0.834
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.832
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.832
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.832
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.832
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.831
Bo9g003700 Brassica oleracea Bo9g003700 I 0.831
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.831
Bra037382 Brassica rapa Bra037382 I 0.831
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.830
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.829
Pavir.J01411 Panicum virgatum Pavir.J01411 I 0.829
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.824
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.821
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.821
Ca_01293 Cicer arietinum Ca_01293 I 0.821
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.821
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.820
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.818
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.818
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.817
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.817
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.817
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.817
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.814
Bra011701 Brassica rapa Bra011701 I 0.813
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.813
Bo1g005460 Brassica oleracea Bo1g005460 I 0.813
Bra010572 Brassica rapa Bra010572 I 0.813
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.811
MDP0000239688 Malus domestica MDP0000239688 I 0.810
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.808
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.808
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D 0.807
Pm024103 Prunus mume Pm024103 I 0.806
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.806
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.804
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.803
Ca_17787 Cicer arietinum Ca_17787 I 0.803
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.803
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.801
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.800
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.800
GBF1 Arabidopsis thaliana AT4G36730 D 0.800
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.800
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.800
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.800
29646.m001068 Ricinus communis 29646.m001068 I 0.798
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.798
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.797
PK07494.1 Cannabis sativa PK07494.1 I 0.796
ONIVA07G05320 Oryza nivara ONIVA07G05320 I 0.794
OMERI07G05820 Oryza meridionalis OMERI07G05820 I 0.794
OLONG_021599 Oryza longistaminata OLONG_021599 I 0.794
BGIOSGA025382 Oryza indica BGIOSGA025382 I 0.794
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.794
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I 0.794
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I 0.794
OS07G0209800 Oryza sativa OS07G0209800 I 0.794
OPUNC07G06790 Oryza punctata OPUNC07G06790 I 0.794
Sb02g006350 Sorghum bicolor Sb02g006350 I 0.794
Si030123m.g Setaria italica Si030123m.g I 0.794
LPERR07G06120 Leersia perrieri LPERR07G06120 I 0.794
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I 0.794
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I 0.794
GRMZM2G171370 Zea mays GRMZM2G171370 I 0.794
GRMZM2G095078 Zea mays GRMZM2G095078 I 0.794
OB07G15280 Oryza brachyantha OB07G15280 I 0.794
TRIUR3_31142 Triticum urartu TRIUR3_31142 I 0.794
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I 0.794
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I 0.794
OBART07G07070 Oryza barthii OBART07G07070 I 0.794
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I 0.792
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.792
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.791
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I 0.789
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.789
MDP0000231274 Malus domestica MDP0000231274 I 0.789
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.789
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.789
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.789
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I 0.787
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I 0.787
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.787
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.787
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.786
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.786
Bo4g038560 Brassica oleracea Bo4g038560 I 0.785
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.785
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.785
Si039367m.g Setaria italica Si039367m.g I 0.784
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.784
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.784
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I 0.783