CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GBF3
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT2G46270
T056892_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3###Os DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GBF3
M01779_2.00
Arabidopsis thaliana
NBMCASSTVD
HBASSTGKVN
PBM
Weirauch et al.(2014)
pTH7328
(Direct)
(Direct)
GBF3
M06770_2.00
Arabidopsis thaliana
DNHDNHSACGTGKMD
HKMCACGTSDNHDNH
Dap-seq
OMalley et al.(2016)
GBF3_colamp
(Direct)
(Direct)
GBF3
M06771_2.00
Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH
Dap-seq
OMalley et al.(2016)
GBF3_col
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK09653.1
M01156_2.00
Cannabis sativa
NNMCASVNNN
NNNBSTGKNN
PBM
Lambert et al.(2019)
pTH10114
0.868
0.781
Q40645_ORYSA
M10050_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OSBZ8_Q6
0.854
0.750
Q41109_PHAVU
M10078_2.00
Phaseolus vulgaris
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ROM_Q2
0.854
0.781
GBF2
M01781_2.00
Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV
PBM
Weirauch et al.(2014)
pTH7258
0.834
0.734
TAF1_TOBAC
M10079_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_01
0.820
0.750
TAF1_TOBAC
M10080_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_Q2
0.820
0.750
CPRF1_PETCR
M10066_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_01
0.807
0.703
CPRF1_PETCR
M10067_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_Q2
0.807
0.703
CPRF1_PETCR
M10068_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF_Q2
0.807
0.703
GBF1
M01783_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Weirauch et al.(2014)
pTH7259
0.800
0.641
GBF1
M09913_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_01
0.800
0.641
GBF1
M09914_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1F_Q2
0.800
0.641
GBF1
M09915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2_01
0.800
0.641
GBF1
M09916_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2
0.800
0.641
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01779_2.00
bZIP
51
114
ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G46270.1
bZIP
257
320
ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA
AT2G46270.2
bZIP
234
297
ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA
AT2G46270.3
bZIP
257
320
ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA
AT2G46270.4
bZIP
234
297
ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
179 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy