DPBF3 (Arabidopsis thaliana)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 AT3G56850 T056903_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM

KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
(Direct) (Direct)
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN

NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
(Direct) (Direct)
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN

NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
(Direct) (Direct)
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH

DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
(Direct) (Direct)
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH

DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK24978.1
M01162_2.00
Cannabis sativa
NNNCACGTRTHNNNN

NNNNDAYACGTGNNN
PBM
Lambert et al.(2019)
pTH10153
0.788 0.692
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN

NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.786 0.673
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH

DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.786 0.673
For this family, TFs with SR scores > 0.782 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01058_2.00 bZIP 51 104
M01059_2.00 bZIP 51 104
M01133_2.00 bZIP 51 104

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G56850.1 bZIP 223 276

Links

Other bZIP family TFs
Other Arabidopsis thaliana TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R008590 Calypte anna Aan_R008590 I 0.000
Afo_R000623 Aptenodytes forsteri Afo_R000623 I 0.000
Brh_R008967 Buceros rhinoceros Brh_R008967 I 0.000
ZBTB49 Anolis carolinensis ENSACAG00000010957 I 0.000
ENSAMEG00000013670 Ailuropoda melanoleuca ENSAMEG00000013670 I 0.000
ENSAPLG00000003489 Anas platyrhynchos ENSAPLG00000003489 I 0.000
ZBTB49 Bos taurus ENSBTAG00000014680 I 0.000
ZBTB49 Canis familiaris ENSCAFG00000015688 I 0.000
ZBTB49 Callithrix jacchus ENSCJAG00000000119 I 0.000
ZBTB49 Cavia porcellus ENSCPOG00000007981 I 0.000
ENSCSAG00000016270 Chlorocebus sabaeus ENSCSAG00000016270 I 0.000
ZBTB49 Dasypus novemcinctus ENSDNOG00000016261 I 0.000
ZBTB49 Equus caballus ENSECAG00000013694 I 0.000
ENSFALG00000009426 Ficedula albicollis ENSFALG00000009426 I 0.000
ZBTB49 Felis catus ENSFCAG00000015510 I 0.000
ZBTB49 Homo sapiens ENSG00000168826 D 0.000
ZBTB49 Gallus gallus ENSGALG00000015009 I 0.000
ZBTB49 Gorilla gorilla ENSGGOG00000013012 I 0.000
ENSLACG00000007886 Latimeria chalumnae ENSLACG00000007886 I 0.000
ENSLOCG00000009974 Lepisosteus oculatus ENSLOCG00000009974 I 0.000
ZBTB49 Meleagris gallopavo ENSMGAG00000012706 I 0.000
ENSMICG00000000204 Microcebus murinus ENSMICG00000000204 I 0.000
ZBTB49 Myotis lucifugus ENSMLUG00000009904 I 0.000
ZBTB49 Macaca mulatta ENSMMUG00000023394 I 0.000
ZBTB49 Monodelphis domestica ENSMODG00000001516 I 0.000
Zbtb49 Mus musculus ENSMUSG00000029127 I 0.000
ENSNLEG00000016142 Nomascus leucogenys ENSNLEG00000016142 I 0.000
ENSOARG00000007577 Ovis aries ENSOARG00000007577 I 0.000
ZBTB49 Oryctolagus cuniculus ENSOCUG00000007993 I 0.000
ZBTB49 Otolemur garnettii ENSOGAG00000000988 I 0.000
ENSP00000338807-D1 Bos grunniens ENSP00000338807-D1 I 0.000
ENSPANG00000015665 Papio anubis ENSPANG00000015665 I 0.000
ENSPPYG00000014601 Pongo abelii ENSPPYG00000014601 I 0.000
ENSPSIG00000015554 Pelodiscus sinensis ENSPSIG00000015554 I 0.000
ZBTB49 Pan troglodytes ENSPTRG00000015868 I 0.000
ZBTB49 Pteropus vampyrus ENSPVAG00000015185 I 0.000
Zbtb49 Rattus norvegicus ENSRNOG00000005633 I 0.000
ENSSHAG00000008414 Sarcophilus harrisii ENSSHAG00000008414 I 0.000
ZBTB49 Sus scrofa ENSSSCG00000008728 I 0.000
ENSSTOG00000000550 Ictidomys tridecemlineatus ENSSTOG00000000550 I 0.000
ENSTBEG00000005000 Tupaia belangeri ENSTBEG00000005000 I 0.000
ZBTB49 Taeniopygia guttata ENSTGUG00000009920 I 0.000
Gfo_R014333 Geospiza fortis Gfo_R014333 I 0.000
Myotis_brandtii_ZBTB49_10013405 Myotis brandtii Myotis_brandtii_ZBTB49_10013405 I 0.000
Pvit_18935 Pogona vitticeps Pvit_18935 I 0.000