CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DPBF3
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT3G56850
T056903_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
(Direct)
(Direct)
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
(Direct)
(Direct)
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
(Direct)
(Direct)
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
(Direct)
(Direct)
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK24978.1
M01162_2.00
Cannabis sativa
NNNCACGTRTHNNNN
NNNNDAYACGTGNNN
PBM
Lambert et al.(2019)
pTH10153
0.788
0.692
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.786
0.673
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.786
0.673
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01058_2.00
bZIP
51
104
KTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKI
M01059_2.00
bZIP
51
104
KTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKI
M01133_2.00
bZIP
51
104
KTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKI
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G56850.1
bZIP
223
276
KTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKI
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
304 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy