CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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FD
(
Arabidopsis thaliana
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
AT4G35900
T056913_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.796
0.516
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.796
0.516
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.796
0.516
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.796
0.516
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.796
0.516
PK24978.1
M01162_2.00
Cannabis sativa
NNNCACGTRTHNNNN
NNNNDAYACGTGNNN
PBM
Lambert et al.(2019)
pTH10153
0.791
0.677
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G35900.1
bZIP
213
274
SGNRRHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQQDQLKMAAAIQQPKK
AT4G35900.2
bZIP
213
243
SGNRRHKRMIKNRESAARSRARKQECASPLP
Links
Other
bZIP
family TFs
Other
Arabidopsis thaliana
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy