HY5 (Arabidopsis thaliana)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 AT5G11260 T056924_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HY5
M06790_2.00
Arabidopsis thaliana
DNHGVTGACGTSDMN

NKHSACGTCABCDNH
Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a
(Direct) (Direct)
HY5
M08407_2.00
Arabidopsis thaliana
NNHGMCACGTGKCDNN

NNHGMCACGTGKCDNN
ChIP-chip
Mathelier et al.(2014)
MA0551.1
(Direct) (Direct)
HY5
M09919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HY5_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q39895_SOYBN
M10048_2.00
Glycine max Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_01
0.831 0.841
Q39895_SOYBN
M10049_2.00
Glycine max Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_02
0.831 0.841
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G11260.1 bZIP 86 150
AT5G11260.2 bZIP 86 148

Links

Other bZIP family TFs
Other Arabidopsis thaliana TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.861
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.857
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.857
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.857
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.857
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.857
OS02G0203000 Oryza sativa OS02G0203000 I 0.857
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.857
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.857
MDP0000264514 Malus domestica MDP0000264514 I 0.857
29848.m004650 Ricinus communis 29848.m004650 I 0.857
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.857
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.857
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.857
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.857
Ca_21380 Cicer arietinum Ca_21380 I 0.857
HY5 Vitis vinifera VIT_04s0008g05210 I 0.857
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.857
Cla022656 Citrullus lanatus Cla022656 I 0.857
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.857
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.857
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.857
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.857
MDP0000586302 Malus domestica MDP0000586302 I 0.857
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.857
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.857
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.857
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.857
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.857
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.857
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.857
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.857
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.857
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.857
PK17235.1 Cannabis sativa PK17235.1 I 0.857
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.857
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.857
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.857
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.857
OB02G17160 Oryza brachyantha OB02G17160 I 0.857
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.857
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.854
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.854
Bo2g010330 Brassica oleracea Bo2g010330 I 0.850
Bra023317 Brassica rapa Bra023317 I 0.850
mgf014305m Mimulus guttatus mgf014305m I 0.850
Bo9g171430 Brassica oleracea Bo9g171430 I 0.850
Bra008976 Brassica rapa Bra008976 I 0.850
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.850
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.848
Si018524m.g Setaria italica Si018524m.g I 0.848
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.848
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.848
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.845
mgf012104m Mimulus guttatus mgf012104m I 0.845
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.845
TCM_038392 Theobroma cacao TCM_038392 I 0.845
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.845
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.839
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.839
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.839
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.839
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.839
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.839
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.838
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.838
Cla021273 Citrullus lanatus Cla021273 I 0.836
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.833
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.833
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.833
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.833
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.830
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.829
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.828
OBART02G07840 Oryza barthii OBART02G07840 I 0.826
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.826
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.824
OBART06G20230 Oryza barthii OBART06G20230 I 0.824
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.824
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.824
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.824
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.823
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.819
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.818
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.818
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.811
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.811
F775_05429 Aegilops tauschii F775_05429 I 0.811
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.811
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.811
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.811
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.796
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.796
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.796
Ca_22618 Cicer arietinum Ca_22618 I 0.795
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.791
Eucgr.B02198 Eucalyptus grandis Eucgr.B02198 I 0.790
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.789
OS06G0601500 Oryza sativa OS06G0601500 I 0.788
OBART06G20240 Oryza barthii OBART06G20240 I 0.788
OLONG_013539 Oryza longistaminata OLONG_013539 I 0.788
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.787
Pm007163 Prunus mume Pm007163 I 0.787