CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Atf6b
(
Mus musculus
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
ENSMUSG00000015461
T060455_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific. Predicted to be involved in endoplasmic reticulum unfolded protein response; negative regulation of ATF6-mediated unfolded protein response; and positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of RNA polymerase II transcription regulator complex and protein-DNA complex. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human ATF6B (activating transcription factor 6 beta). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATF6B
M04375_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_1
0.883
1.000
ATF6B
M04376_2.00
Homo sapiens
NRTGACGTGGCR
YGCCACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_2
0.883
1.000
ATF6B
M04377_2.00
Homo sapiens
TGCCACGTGGCR
YGCCACGTGGCA
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_3
0.883
1.000
ATF6B
M04041_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.1
0.883
1.000
ATF6B
M04042_2.00
Homo sapiens
YGMCACGTGKCR
YGMCACGTGKCR
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.2
0.883
1.000
ATF6B
M04043_2.00
Homo sapiens
RTGACGTCAYC
GRTGACGTCAY
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.3
0.883
1.000
ATF6B
M04044_2.00
Homo sapiens
MCCACGATGT
ACATCGTGGK
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.4
0.883
1.000
ATF6B
M04378_2.00
Homo sapiens
SRTGACGTCAYB
VRTGACGTCAYS
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_1
0.883
1.000
ATF6B
M04379_2.00
Homo sapiens
BRTGACGTGGCR
YGCCACGTCAYV
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_2
0.883
1.000
ATF6
M04254_2.00
Homo sapiens
YKRTGACGTGGCAN
NTGCCACGTCAYMR
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_1
0.832
0.625
ATF6
M04255_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_2
0.832
0.625
ATF6
M04018_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.1
0.832
0.625
ATF6
M04019_2.00
Homo sapiens
KAGTCACGTGK
MCACGTGACTM
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.2
0.832
0.625
ATF6
M04020_2.00
Homo sapiens
BNRTGACGTCATCA
TGATGACGTCAYNV
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.3
0.832
0.625
ATF6
M04021_2.00
Homo sapiens
ACCACGATGTY
RACATCGTGGT
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.4
0.832
0.625
ATF6
M08790_2.00
Homo sapiens
VBSSTGACGTGG
CCACGTCASSVB
Misc
Kulakovskiy et al.(2013)
ATF6A_HUMAN.H11MO.0.B
0.832
0.625
ATF6
M09947_2.00
Homo sapiens
TGACGTGG
CCACGTCA
Transfac
Matys et al.(2006)
V$ATF6_01
0.832
0.625
ATF6
M04256_2.00
Homo sapiens
YGRTGACGTGGCRN
NYGCCACGTCAYCR
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_1
0.832
0.625
ATF6
M04257_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_2
0.832
0.625
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000015605
bZIP
327
390
AKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENS
ENSMUSP00000133516
bZIP
330
393
AKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENS
Links
Other
bZIP
family TFs
Other
Mus musculus
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy