CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA05G25200
(
Glycine max
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
GLYMA05G25200
T062917_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.785
0.627
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.786
0.516
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.786
0.516
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.786
0.516
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.786
0.533
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA05G25200.1
bZIP
139
189
KATLQKLRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLLKEELF
GLYMA05G25200.2
bZIP
139
189
KATLQKLRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLLKEEVR
GLYMA05G25200.3
bZIP
139
200
KATLQKLRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLLKEEAEMRRQRKKHLFE
GLYMA05G25200.4
bZIP
139
198
KATLQKLRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENARLLKEEAEMRRQRKKHV
Links
Other
bZIP
family TFs
Other
Glycine max
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy