CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
OMERI01G34960
(
Oryza meridionalis
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
OMERI01G34960
T065698_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TGA9
M01053_2.00
Arabidopsis thaliana
NNNMTGACGTHN
NDACGTCAKNNN
PBM
Sullivan et al.(2014)
pTH9788
0.783
0.840
TGA9
M06748_2.00
Arabidopsis thaliana
RTGACGTCAKC
GMTGACGTCAY
Dap-seq
OMalley et al.(2016)
TGA9_col_a
0.783
0.840
TGA9
M06749_2.00
Arabidopsis thaliana
TKACGTCAKCD
HGMTGACGTMA
Dap-seq
OMalley et al.(2016)
TGA9_colamp_a
0.783
0.840
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OMERI01G34960.2
bZIP
658
707
VDAKTERRLAQNREAARKSRLRKKAYVQNLETSRVRLQQIEQELQRARSQ
OMERI01G34960.3
bZIP
656
705
VDAKTERRLAQNREAARKSRLRKKAYVQNLETSRVRLQQIEQELQRARSQ
OMERI01G34960.4
bZIP
641
691
GDHDKTERRLAQNREAARKSRLRKKAYVQNLETSRVRLQQIEQELQRARSQ
OMERI01G34960.5
bZIP
190
239
VDAKTERRLAQNREAARKSRLRKKAYVQNLETSRVRLQQIEQELQRARSQ
OMERI01G34960.6
bZIP
190
239
VDAKTERRLAQNREAARKSRLRKKAYVQNLETSRVRLQQIEQELQRARSQ
Links
Other
bZIP
family TFs
Other
Oryza meridionalis
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy