CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0016s03590
(
Populus trichocarpa
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
POPTR_0016s03590
T067011_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK09021.1
M01155_2.00
Cannabis sativa
NNTGACGTMA
TKACGTCANN
PBM
Lambert et al.(2019)
pTH10175
0.805
0.980
TGA6
M01780_2.00
Arabidopsis thaliana
NNTGACGTMA
TKACGTCANN
PBM
Weirauch et al.(2014)
pTH8691
0.805
0.960
TGA6
M01055_2.00
Arabidopsis thaliana
NNVTGACGTMN
NKACGTCABNN
PBM
Sullivan et al.(2014)
pTH8858
0.805
0.960
TGA2
M01784_2.00
Arabidopsis thaliana
NNACGTCABN
NVTGACGTNN
PBM
Weirauch et al.(2014)
pTH8820
0.805
0.960
TGA2
M00856_2.00
Arabidopsis thaliana
NVTGACGTMN
NKACGTCABN
PBM
Franco-Zorrilla et al.(2014)
TGA2
0.805
0.960
TGA5
M01785_2.00
Arabidopsis thaliana
VTGACGTN
NACGTCAB
PBM
Weirauch et al.(2014)
pTH8180
0.805
0.960
TGA2
M06785_2.00
Arabidopsis thaliana
YNMCGYCABCD
HGVTGRCGKNR
Dap-seq
OMalley et al.(2016)
TGA2_colamp_v31
0.805
0.960
TGA2
M06786_2.00
Arabidopsis thaliana
NNNNNDNHGMTGACGTCAYH
DRTGACGTCAKCDNHNNNNN
Dap-seq
OMalley et al.(2016)
TGA2_col
0.805
0.960
TGA5
M06787_2.00
Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA5_col_v3a
0.805
0.960
TGA6
M06773_2.00
Arabidopsis thaliana
DRTGACGTCAKCDNN
NNHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA6_col_a
0.805
0.960
TGA6
M06774_2.00
Arabidopsis thaliana
NRTGACGTCAKCDNN
NNHGMTGACGTCAYN
Dap-seq
OMalley et al.(2016)
TGA6_colamp_a
0.805
0.960
HBP1B_WHEAT
M10043_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBP1B_Q6
0.805
0.960
TGA2
M09917_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_01
0.805
0.960
TGA2
M09918_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_Q2
0.805
0.960
TGA9
M01053_2.00
Arabidopsis thaliana
NNNMTGACGTHN
NDACGTCAKNNN
PBM
Sullivan et al.(2014)
pTH9788
0.790
0.900
TGA9
M06748_2.00
Arabidopsis thaliana
RTGACGTCAKC
GMTGACGTCAY
Dap-seq
OMalley et al.(2016)
TGA9_col_a
0.790
0.900
TGA9
M06749_2.00
Arabidopsis thaliana
TKACGTCAKCD
HGMTGACGTMA
Dap-seq
OMalley et al.(2016)
TGA9_colamp_a
0.790
0.900
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0016s03590.1
bZIP
175
224
GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ
Links
Other
bZIP
family TFs
Other
Populus trichocarpa
TFs
275 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ABI4
Arabidopsis lyrata
Al_scaffold_0004_2621
I
0.000
ABI4
Vitis vinifera
VIT_13s0067g01400
I
0.000
abi4
Zea mays
GRMZM2G093595
D
0.000
ABI4
Oryza sativa
OS05G0351200
I
0.000
ABI4
Arabidopsis thaliana
AT2G40220
I
0.000
AMTR_s00007p00053050
Amborella trichopoda
AMTR_s00007p00053050
I
0.000
BGIOSGA018232
Oryza indica
BGIOSGA018232
I
0.000
Bo3g034810
Brassica oleracea
Bo3g034810
I
0.000
Bo4g025410
Brassica oleracea
Bo4g025410
I
0.000
Bostr.23794s0036
Boechera stricta
Bostr.23794s0036
I
0.000
Bra000178
Brassica rapa
Bra000178
I
0.000
Bra004978
Brassica rapa
Bra004978
I
0.000
Cagra.7053s0005
Capsella grandiflora
Cagra.7053s0005
I
0.000
Carubv10025253m.g
Capsella rubella
Carubv10025253m.g
I
0.000
cassava20838.m1
Manihot esculenta
cassava20838.m1
I
0.000
cassava41265.m1
Manihot esculenta
cassava41265.m1
I
0.000
Ca_12465
Cicer arietinum
Ca_12465
I
0.000
chr2.CM0002.60.nc
Lotus japonicus
chr2.CM0002.60.nc
I
0.000
Ciclev10033578m.g
Citrus clementina
Ciclev10033578m.g
I
0.000
Cla006708
Citrullus lanatus
Cla006708
I
0.000
evm.TU.supercontig_1288.2
Carica papaya
evm.TU.supercontig_1288.2
I
0.000
gene21003-v1.0-hybrid
Fragaria vesca
gene21003-v1.0-hybrid
I
0.000
GLYMA02G43240
Glycine max
GLYMA02G43240
I
0.000
GLYMA14G06290
Glycine max
GLYMA14G06290
I
0.000
Gorai.011G291900
Gossypium raimondii
Gorai.011G291900
I
0.000
GSMUA_Achr3G10100_001
Musa acuminata
GSMUA_Achr3G10100_001
I
0.000
GSMUA_Achr5G07400_001
Musa acuminata
GSMUA_Achr5G07400_001
I
0.000
GSMUA_Achr9G18060_001
Musa acuminata
GSMUA_Achr9G18060_001
I
0.000
LPERR05G10140
Leersia perrieri
LPERR05G10140
I
0.000
Lus10009834.g
Linum usitatissimum
Lus10009834.g
I
0.000
Lus10040944.g
Linum usitatissimum
Lus10040944.g
I
0.000
MDP0000225376
Malus domestica
MDP0000225376
I
0.000
MDP0000628484
Malus domestica
MDP0000628484
I
0.000
mgf024416m
Mimulus guttatus
mgf024416m
I
0.000
MTR_5g082950
Medicago truncatula
MTR_5g082950
I
0.000
OGLUM05G13600
Oryza glumaepatula
OGLUM05G13600
I
0.000
OMERI05G11540
Oryza meridionalis
OMERI05G11540
I
0.000
ONIVA05G13490
Oryza nivara
ONIVA05G13490
I
0.000
OPUNC05G11000
Oryza punctata
OPUNC05G11000
I
0.000
orange1.1g038194m.g
Citrus sinensis
orange1.1g038194m.g
I
0.000
ORGLA05G0109500
Oryza glaberrima
ORGLA05G0109500
I
0.000
Pavir.J29572
Panicum virgatum
Pavir.J29572
I
0.000
Pavir.J33237
Panicum virgatum
Pavir.J33237
I
0.000
Pavir.J38620
Panicum virgatum
Pavir.J38620
I
0.000
PGSC0003DMG400034739
Solanum tuberosum
PGSC0003DMG400034739
I
0.000
PGSC0003DMG400041883
Solanum tuberosum
PGSC0003DMG400041883
I
0.000
Pm018953
Prunus mume
Pm018953
I
0.000
POPTR_0008s07120
Populus trichocarpa
POPTR_0008s07120
I
0.000
POPTR_0010s19370
Populus trichocarpa
POPTR_0010s19370
I
0.000
PRUPE_ppa015230mg
Prunus persica
PRUPE_ppa015230mg
I
0.000
SapurV1A.0061s0480
Salix purpurea
SapurV1A.0061s0480
I
0.000
SapurV1A.0650s0090
Salix purpurea
SapurV1A.0650s0090
I
0.000
Sb09g016550
Sorghum bicolor
Sb09g016550
I
0.000
SELMODRAFT_420500
Selaginella moellendorffii
SELMODRAFT_420500
I
0.000
SELMODRAFT_427925
Selaginella moellendorffii
SELMODRAFT_427925
I
0.000
TCM_042471
Theobroma cacao
TCM_042471
I
0.000
Thhalv10017614m.g
Eutrema salsugineum
Thhalv10017614m.g
I
0.000