CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si029970m.g
(
Setaria italica
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
Si029970m.g
T068028_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
O2
M08078_2.00
Zea mays
GMTGACRTGGCRN
NYGCCAYGTCAKC
ChIP-seq
Mathelier et al.(2014)
MA1417.1
0.790
0.873
O2
M10036_2.00
Zea mays
TCATTCCACGTAGATR
YATCTACGTGGAATGA
Transfac
Matys et al.(2006)
P$O2_01
0.790
0.873
O2
M10037_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$O2_02
0.790
0.873
O2
M10038_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$O2_03
0.790
0.873
O2
M10039_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$O2_Q2
0.790
0.873
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si029970m
bZIP
208
270
TEEKVRKRKESNRESARRSRYRKAAHLKEMEDQVAQLKVENSSLLRRLATLNQKYTDATVDNR
Links
Other
bZIP
family TFs
Other
Setaria italica
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Bb00476
Panicum virgatum
Pavir.Bb00476
N
0.863
Pavir.Ba03670
Panicum virgatum
Pavir.Ba03670
N
0.863
Sb02g004610
Sorghum bicolor
Sb02g004610
I
0.813
O2
Zea mays
GRMZM2G015534
D
0.790
Sb02g004590
Sorghum bicolor
Sb02g004590
I
0.787