skn-1 (Caenorhabditis elegans)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 WBGene00004804 T069402_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
skn-1
M00596_2.00
Caenorhabditis elegans
NHRTCABBNH

DNVVTGAYDN
PBM
Narasimhan et al.(2015)
pTH9913
(Direct) (Direct)
skn-1
M08079_2.00
Caenorhabditis elegans
RARATGATGAYAAWD

HWTTRTCATCATYTY
ChIP-seq
Mathelier et al.(2014)
MA0547.1
(Direct) (Direct)
skn-1
M10053_2.00
Caenorhabditis elegans
DDVATGACAWDD

HHWTGTCATBHH
Transfac
Matys et al.(2006)
N$SKN1_01
(Direct) (Direct)
skn-1
M10054_2.00
Caenorhabditis elegans
NWDWATCATBHN

NDVATGATWHWN
Transfac
Matys et al.(2006)
N$SKN1_02
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.782 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00596_2.00 bZIP 51 83

DNA Binding Domains

Protein ID Domain From To Sequence
T19E7.2a bZIP 589 621
T19E7.2b bZIP 276 308
T19E7.2c.1 bZIP 499 531
T19E7.2c.2 bZIP 499 531
T19E7.2c.3 bZIP 499 531
T19E7.2c.4 bZIP 499 531
T19E7.2d bZIP 189 221

Links

Other bZIP family TFs
Other Caenorhabditis elegans TFs

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4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action