CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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skn-1
(
Caenorhabditis elegans
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
WBGene00004804
T069402_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
skn-1
M00596_2.00
Caenorhabditis elegans
NHRTCABBNH
DNVVTGAYDN
PBM
Narasimhan et al.(2015)
pTH9913
(Direct)
(Direct)
skn-1
M08079_2.00
Caenorhabditis elegans
RARATGATGAYAAWD
HWTTRTCATCATYTY
ChIP-seq
Mathelier et al.(2014)
MA0547.1
(Direct)
(Direct)
skn-1
M10053_2.00
Caenorhabditis elegans
DDVATGACAWDD
HHWTGTCATBHH
Transfac
Matys et al.(2006)
N$SKN1_01
(Direct)
(Direct)
skn-1
M10054_2.00
Caenorhabditis elegans
NWDWATCATBHN
NDVATGATWHWN
Transfac
Matys et al.(2006)
N$SKN1_02
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00596_2.00
bZIP
51
83
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T19E7.2a
bZIP
589
621
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2b
bZIP
276
308
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2c.1
bZIP
499
531
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2c.2
bZIP
499
531
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2c.3
bZIP
499
531
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2c.4
bZIP
499
531
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
T19E7.2d
bZIP
189
221
RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH
Links
Other
bZIP
family TFs
Other
Caenorhabditis elegans
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy