Gfo_R004700 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R004700 T070207_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MAFF
M02853_2.00
Homo sapiens
WTGCTGASTCAGCAN

NTGCTGASTCAGCAW
SELEX
Jolma et al.(2013)
MAFF_1
0.962 0.902
MAFF
M04357_2.00
Homo sapiens
NYGCTGASTCAGCRN

NYGCTGASTCAGCRN
SELEX
Yin et al.(2017)
MAFF_eDBD_HT-SELEX_1
0.962 0.902
MAFF
M04358_2.00
Homo sapiens
NYGCTKACGTMAGCRN

NYGCTKACGTMAGCRN
SELEX
Yin et al.(2017)
MAFF_eDBD_HT-SELEX_2
0.962 0.902
MAFF
M04361_2.00
Homo sapiens
NYGCTGASTCAGCRN

NYGCTGASTCAGCRN
SELEX
Yin et al.(2017)
MAFF_FL_HT-SELEX_1
0.962 0.902
MAFF
M04362_2.00
Homo sapiens
NYGCTKACGTMAGCAN

NTGCTKACGTMAGCRN
SELEX
Yin et al.(2017)
MAFF_FL_HT-SELEX_2
0.962 0.902
MAFF
M08074_2.00
Homo sapiens
NWWNTGCTGASTCAGCANWWH

DWWNTGCTGASTCAGCANWWN
ChIP-seq
Mathelier et al.(2014)
MA0495.2
0.962 0.902
MAFF
M07839_2.00
Homo sapiens
TGCTGASTCAGCANW

WNTGCTGASTCAGCA
ChIP-seq
Gerstein et al.(2012)
HepG2_MAFF_Stanford
0.962 0.902
MAFF
M08808_2.00
Homo sapiens
NRDDNWGMTRASTCAGCA

TGCTGASTYAKCWNHHYN
Misc
Kulakovskiy et al.(2013)
MAFF_HUMAN.H11MO.0.B
0.962 0.902
Maff
M08834_2.00
Mus musculus
NWHNTGCTGASTCAGCANWYYN

NRRWNTGCTGASTCAGCANDWN
Misc
Kulakovskiy et al.(2013)
MAFF_MOUSE.H11MO.0.A
0.962 0.902
MAFF
M10012_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MAFF_02
0.962 0.902
Maff
M10032_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MAFF_03
0.962 0.902
MAFF
M10013_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MAFF_04
0.962 0.902
MAFF
M04359_2.00
Homo sapiens
NYGCTGASTCAGCRN

NYGCTGASTCAGCRN
SELEX
Yin et al.(2017)
MAFF_eDBD_Methyl-HT-SELEX_1
0.962 0.902
MAFF
M04360_2.00
Homo sapiens
DYGCTKACRTCAGCAN

NTGCTGAYGTMAGCRH
SELEX
Yin et al.(2017)
MAFF_eDBD_Methyl-HT-SELEX_2
0.962 0.902
MAFF
M04363_2.00
Homo sapiens
NYGCTGASTCAGCRN

NYGCTGASTCAGCRN
SELEX
Yin et al.(2017)
MAFF_FL_Methyl-HT-SELEX_1
0.962 0.902
MAFF
M04364_2.00
Homo sapiens
NYGCTGAYGTCAGCRH

DYGCTGACRTCAGCRN
SELEX
Yin et al.(2017)
MAFF_FL_Methyl-HT-SELEX_2
0.962 0.902
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004700 bZIP 49 116

Links

Other bZIP family TFs
Other Geospiza fortis TFs

Invalid Input OrderBy

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action