Gfo_R004744 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R004744 T070209_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tef
M01803_2.00
Mus musculus
NVTTRYVNNN

NNNBRYAABN
PBM
Weirauch et al.(2014)
pTH5078
0.891 0.969
TEF
M02849_2.00
Homo sapiens
NRTTAYGTAAYN

NRTTACRTAAYN
SELEX
Jolma et al.(2013)
TEF_1
0.891 0.969
TEF
M02850_2.00
Homo sapiens
NVTTAYGTAABN

NVTTACRTAABN
SELEX
Jolma et al.(2013)
TEF_2
0.891 0.969
TEF
M04325_2.00
Homo sapiens
NRTTACGTAAYN

NRTTACGTAAYN
SELEX
Yin et al.(2017)
TEF_eDBD_HT-SELEX
0.891 0.969
TEF
M09983_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TEF_05
0.891 0.969
TEF
M09984_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TEF_06
0.891 0.969
TEF
M09985_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TEF_Q6
0.891 0.969
TEF
M09986_2.00
Homo sapiens
MTKAYGTAAY

RTTACRTMAK
Transfac
Matys et al.(2006)
V$VBP_01
0.891 0.969
TEF
M04326_2.00
Homo sapiens
NRTTACRTAAYN

NRTTAYGTAAYN
SELEX
Yin et al.(2017)
TEF_eDBD_Methyl-HT-SELEX
0.891 0.969
HLF
M02831_2.00
Homo sapiens
NRTTAYRTAABN

NVTTAYRTAAYN
SELEX
Jolma et al.(2013)
HLF_1
0.847 0.781
Hlf
M02860_2.00
Mus musculus
KRTTACGTAAYN

NRTTACGTAAYM
SELEX
Jolma et al.(2013)
Hlf_1
0.847 0.781
HLF
M04245_2.00
Homo sapiens
NVTTRCRYAABN

NVTTRYGYAABN
SELEX
Yin et al.(2017)
HLF_FL_HT-SELEX
0.847 0.781
HLF
M04016_2.00
Homo sapiens
RTKAYRTAAB

VTTAYRTMAY
SELEX
Rodriguez-Martinez et al.(2017)
HLF.1
0.847 0.781
HLF
M08786_2.00
Homo sapiens
NRTTRYGTAAYMS

SKRTTACRYAAYN
Misc
Kulakovskiy et al.(2013)
HLF_HUMAN.H11MO.0.C
0.847 0.781
Hlf
M08815_2.00
Mus musculus
VTTRTGYAABH

DVTTRCAYAAB
Misc
Kulakovskiy et al.(2013)
HLF_MOUSE.H11MO.0.C
0.847 0.781
HLF
M09937_2.00
Homo sapiens
ATKRYGTAAY

RTTACRYMAT
Transfac
Matys et al.(2006)
V$HLF_01
0.847 0.781
HLF
M04246_2.00
Homo sapiens
NVTTRCRYAABN

NVTTRYGYAABN
SELEX
Yin et al.(2017)
HLF_FL_Methyl-HT-SELEX
0.847 0.781
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004744 bZIP 216 279

Links

Other bZIP family TFs
Other Geospiza fortis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R004902 Calypte anna Aan_R004902 I 0.844
Aan_R013230 Calypte anna Aan_R013230 I 0.891
AATE006511 Anopheles atroparvus AATE006511 I 0.797
Afo_R002997 Aptenodytes forsteri Afo_R002997 I 0.844
Afo_R007951 Aptenodytes forsteri Afo_R007951 I 0.891
Alligator_sinensis_CCG007983.1 Alligator sinensis Alligator_sinensis_CCG007983.1 I 0.891
Alligator_sinensis_CCG020587.1 Alligator sinensis Alligator_sinensis_CCG020587.1 I 0.832
BGIBMGA003874 Bombyx mori BGIBMGA003874 I 0.784
Brh_R008067 Buceros rhinoceros Brh_R008067 I 0.844
Brh_R010854 Buceros rhinoceros Brh_R010854 I 0.891
CGI_10008414 Crassostrea gigas CGI_10008414 I 0.803
Cmyd_10013489 Chelonia mydas Cmyd_10013489 I 0.844
TEF Anolis carolinensis ENSACAG00000004810 I 0.891
HLF Anolis carolinensis ENSACAG00000017417 I 0.844
ENSAMEG00000002146 Ailuropoda melanoleuca ENSAMEG00000002146 I 0.891
ENSAMEG00000014714 Ailuropoda melanoleuca ENSAMEG00000014714 I 0.847
ENSAMXG00000008798 Astyanax mexicanus ENSAMXG00000008798 I 0.858
ENSAMXG00000009417 Astyanax mexicanus ENSAMXG00000009417 I 0.801
ENSAMXG00000015442 Astyanax mexicanus ENSAMXG00000015442 I 0.870
ENSAMXG00000016053 Astyanax mexicanus ENSAMXG00000016053 I 0.807
ENSAMXG00000017639 Astyanax mexicanus ENSAMXG00000017639 I 0.873
ENSAPLG00000004386 Anas platyrhynchos ENSAPLG00000004386 I 0.844
ENSAPLG00000005838 Anas platyrhynchos ENSAPLG00000005838 I 0.891
HLF Bos taurus ENSBTAG00000006618 I 0.847
TEF Bos taurus ENSBTAG00000016580 I 0.891
ENSBTAP00000008682-D1 Bos grunniens ENSBTAP00000008682-D1 I 0.847
ENSBTAP00000022056-D1 Bos grunniens ENSBTAP00000022056-D1 I 0.891
TEF Canis familiaris ENSCAFG00000001095 I 0.891
HLF Canis familiaris ENSCAFG00000030851 I 0.847
ENSCHOG00000001396 Choloepus hoffmanni ENSCHOG00000001396 I 0.847
TEF Choloepus hoffmanni ENSCHOG00000009442 I 0.851
TEF Callithrix jacchus ENSCJAG00000004977 I 0.891
HLF Callithrix jacchus ENSCJAG00000011298 I 0.847
ENSCPOG00000011000 Cavia porcellus ENSCPOG00000011000 I 0.847
TEF Cavia porcellus ENSCPOG00000020591 I 0.891
ENSCSAG00000005557 Chlorocebus sabaeus ENSCSAG00000005557 I 0.847
ENSCSAG00000005816 Chlorocebus sabaeus ENSCSAG00000005816 I 0.891
tefa Danio rerio ENSDARG00000039117 I 0.875
hlfb Danio rerio ENSDARG00000061011 I 0.822
dbpa Danio rerio ENSDARG00000063014 I 0.801
hlfa Danio rerio ENSDARG00000074752 I 0.842
tefb Danio rerio ENSDARG00000098103 I 0.860
TEF Dasypus novemcinctus ENSDNOG00000035257 I 0.891
ENSDORG00000012644 Dipodomys ordii ENSDORG00000012644 I 0.847
Tef Dipodomys ordii ENSDORG00000014982 I 0.891
HLF Equus caballus ENSECAG00000016953 I 0.847
TEF Equus caballus ENSECAG00000018137 I 0.891
HLF Erinaceus europaeus ENSEEUG00000010964 I 0.847
HLF Echinops telfairi ENSETEG00000017670 I 0.847
ENSFALG00000002265 Ficedula albicollis ENSFALG00000002265 I 0.844
ENSFALG00000011967 Ficedula albicollis ENSFALG00000011967 I 0.891
TEF Felis catus ENSFCAG00000003674 I 0.891
HLF Felis catus ENSFCAG00000022556 I 0.847
HLF Homo sapiens ENSG00000108924 D 0.847
TEF Homo sapiens ENSG00000167074 D 0.891
tefa Gasterosteus aculeatus ENSGACG00000004793 I 0.858
tefb Gasterosteus aculeatus ENSGACG00000007628 I 0.879
hlfb Gasterosteus aculeatus ENSGACG00000010103 I 0.818
HLF Gallus gallus ENSGALG00000003059 I 0.844
TEF Gallus gallus ENSGALG00000011958 I 0.891
HLF Gorilla gorilla ENSGGOG00000006075 I 0.847
TEF Gorilla gorilla ENSGGOG00000016460 I 0.891
ENSGMOG00000004830 Gadus morhua ENSGMOG00000004830 I 0.844
ENSGMOG00000013327 Gadus morhua ENSGMOG00000013327 I 0.825
ENSGMOG00000014488 Gadus morhua ENSGMOG00000014488 I 0.835
ENSLACG00000012701 Latimeria chalumnae ENSLACG00000012701 I 0.864
ENSLACG00000012726 Latimeria chalumnae ENSLACG00000012726 I 0.844
TEF Loxodonta africana ENSLAFG00000013151 I 0.891
HLF Loxodonta africana ENSLAFG00000016475 I 0.847
ENSLOCG00000011595 Lepisosteus oculatus ENSLOCG00000011595 I 0.854
ENSLOCG00000012233 Lepisosteus oculatus ENSLOCG00000012233 I 0.847
ENSMEUG00000013604 Macropus eugenii ENSMEUG00000013604 I 0.891
ENSMEUG00000016384 Macropus eugenii ENSMEUG00000016384 I 0.847
TEF Meleagris gallopavo ENSMGAG00000012262 I 0.891
ENSMICG00000002860 Microcebus murinus ENSMICG00000002860 I 0.847
ENSMICG00000013518 Microcebus murinus ENSMICG00000013518 I 0.891
TEF Myotis lucifugus ENSMLUG00000002459 I 0.891
HLF Myotis lucifugus ENSMLUG00000007393 I 0.847
TEF Macaca mulatta ENSMMUG00000005221 I 0.891
HLF Macaca mulatta ENSMMUG00000022627 I 0.847
HLF Monodelphis domestica ENSMODG00000014851 I 0.847
TEF Monodelphis domestica ENSMODG00000016547 I 0.891
ENSMPUG00000015400 Mustela putorius furo ENSMPUG00000015400 I 0.847
ENSMPUG00000016407 Mustela putorius furo ENSMPUG00000016407 I 0.891
Hlf Mus musculus ENSMUSG00000003949 D 0.847
Tef Mus musculus ENSMUSG00000022389 D 0.891
ENSNLEG00000007993 Nomascus leucogenys ENSNLEG00000007993 I 0.847
ENSNLEG00000015473 Nomascus leucogenys ENSNLEG00000015473 I 0.891
HLF Ornithorhynchus anatinus ENSOANG00000010288 I 0.832
TEF Ornithorhynchus anatinus ENSOANG00000011535 I 0.891
ENSOARG00000018238 Ovis aries ENSOARG00000018238 I 0.891
HLF Oryctolagus cuniculus ENSOCUG00000010547 I 0.847
TEF Oryctolagus cuniculus ENSOCUG00000012866 I 0.891
HLF Otolemur garnettii ENSOGAG00000007056 I 0.847
TEF Otolemur garnettii ENSOGAG00000025997 I 0.891
ENSONIG00000007041 Oreochromis niloticus ENSONIG00000007041 I 0.801
ENSONIG00000008480 Oreochromis niloticus ENSONIG00000008480 I 0.863
ENSONIG00000009563 Oreochromis niloticus ENSONIG00000009563 I 0.859
ENSONIG00000012778 Oreochromis niloticus ENSONIG00000012778 I 0.800
ENSONIG00000019079 Oreochromis niloticus ENSONIG00000019079 I 0.847
ENSONIG00000019694 Oreochromis niloticus ENSONIG00000019694 I 0.863
HLF Ochotona princeps ENSOPRG00000004195 I 0.847
TEF Ochotona princeps ENSOPRG00000013592 I 0.890
hlfa Oryzias latipes ENSORLG00000000969 I 0.859
tefa Oryzias latipes ENSORLG00000002582 I 0.887
ENSORLG00000011412 Oryzias latipes ENSORLG00000011412 I 0.800
tefb Oryzias latipes ENSORLG00000014144 I 0.866
ENSP00000226067 Macaca fascicularis ENSP00000226067 I 0.847
ENSP00000403078 Macaca fascicularis ENSP00000403078 I 0.891
ENSPANG00000022360 Papio anubis ENSPANG00000022360 I 0.847
ENSPANG00000024579 Papio anubis ENSPANG00000024579 I 0.891
ENSPFOG00000004560 Poecilia formosa ENSPFOG00000004560 I 0.847
ENSPFOG00000007430 Poecilia formosa ENSPFOG00000007430 I 0.801
ENSPFOG00000010189 Poecilia formosa ENSPFOG00000010189 I 0.794
ENSPFOG00000013950 Poecilia formosa ENSPFOG00000013950 I 0.866
ENSPFOG00000016821 Poecilia formosa ENSPFOG00000016821 I 0.875
ENSPFOG00000018222 Poecilia formosa ENSPFOG00000018222 I 0.859
ENSPPYG00000008257 Pongo abelii ENSPPYG00000008257 I 0.847
ENSPPYG00000011867 Pongo abelii ENSPPYG00000011867 I 0.891
ENSPSIG00000006835 Pelodiscus sinensis ENSPSIG00000006835 I 0.891
ENSPSIG00000016356 Pelodiscus sinensis ENSPSIG00000016356 I 0.844
HLF Pan troglodytes ENSPTRG00000009424 I 0.847
TEF Pan troglodytes ENSPTRG00000014425 I 0.891
TEF Pteropus vampyrus ENSPVAG00000001160 I 0.891
HLF Pteropus vampyrus ENSPVAG00000007461 I 0.847
Hlf Rattus norvegicus ENSRNOG00000002456 I 0.847
Tef Rattus norvegicus ENSRNOG00000019383 I 0.891
TEF Sorex araneus ENSSARG00000003323 I 0.891
ENSSARG00000013841 Sorex araneus ENSSARG00000013841 I 0.847
ENSSHAG00000009361 Sarcophilus harrisii ENSSHAG00000009361 I 0.891
ENSSHAG00000015304 Sarcophilus harrisii ENSSHAG00000015304 I 0.847
ENSSTOG00000019642 Ictidomys tridecemlineatus ENSSTOG00000019642 I 0.891
ENSSTOG00000029018 Ictidomys tridecemlineatus ENSSTOG00000029018 I 0.847
HLF Tupaia belangeri ENSTBEG00000006958 I 0.847
TEF Tupaia belangeri ENSTBEG00000010576 I 0.891
HLF Taeniopygia guttata ENSTGUG00000009478 I 0.844
TEF Taeniopygia guttata ENSTGUG00000009944 I 0.891
ENSTNIG00000002167 Tetraodon nigroviridis ENSTNIG00000002167 I 0.807
ENSTNIG00000003545 Tetraodon nigroviridis ENSTNIG00000003545 I 0.836
ENSTNIG00000004400 Tetraodon nigroviridis ENSTNIG00000004400 I 0.808
ENSTNIG00000008098 Tetraodon nigroviridis ENSTNIG00000008098 I 0.800
hlfa Tetraodon nigroviridis ENSTNIG00000011274 I 0.822
tefa Tetraodon nigroviridis ENSTNIG00000012940 I 0.875
tefb Takifugu rubripes ENSTRUG00000003565 I 0.879
hlfa Takifugu rubripes ENSTRUG00000003731 I 0.822
ENSTRUG00000003893 Takifugu rubripes ENSTRUG00000003893 I 0.800
hlfb Takifugu rubripes ENSTRUG00000003909 I 0.831
ENSTRUG00000007098 Takifugu rubripes ENSTRUG00000007098 I 0.808
tefa Takifugu rubripes ENSTRUG00000017028 I 0.875
ENSTSYG00000008965 Tarsius syrichta ENSTSYG00000008965 I 0.891
ENSTSYG00000009210 Tarsius syrichta ENSTSYG00000009210 I 0.847
TEF Tursiops truncatus ENSTTRG00000003365 I 0.891
HLF Tursiops truncatus ENSTTRG00000007194 I 0.847
TEF Vicugna pacos ENSVPAG00000002612 I 0.891
ENSXMAG00000000678 Xiphophorus maculatus ENSXMAG00000000678 I 0.875
ENSXMAG00000012054 Xiphophorus maculatus ENSXMAG00000012054 I 0.794
ENSXMAG00000012903 Xiphophorus maculatus ENSXMAG00000012903 I 0.849
ENSXMAG00000014158 Xiphophorus maculatus ENSXMAG00000014158 I 0.786
ENSXMAG00000016939 Xiphophorus maculatus ENSXMAG00000016939 I 0.837
e_gw.273.32.1 Branchiostoma floridae e_gw.273.32.1 I 0.794
e_gw.273.54.1 Branchiostoma floridae e_gw.273.54.1 I 0.794
Gfo_R006518 Geospiza fortis Gfo_R006518 I 0.844
HHAL005759-PA Halyomorpha halys HHAL005759-PA I 0.786
HMEL011029 Heliconius melpomene HMEL011029 I 0.784
ISCW004978 Ixodes scapularis ISCW004978 I 0.789
KGM_21614 Danaus plexippus KGM_21614 I 0.784
MCINX004280 Melitaea cinxia MCINX004280 I 0.784
Myotis_brandtii_Hlf_10020713 Myotis brandtii Myotis_brandtii_Hlf_10020713 I 0.847
Myotis_brandtii_Tef_10013968 Myotis brandtii Myotis_brandtii_Tef_10013968 I 0.891
Ocbimv22024947m.g Octopus bimaculoides Ocbimv22024947m.g I 0.805
Ogr00037 Ophisaurus gracilis Ogr00037 I 0.856
Ogr14443 Ophisaurus gracilis Ogr14443 I 0.891
Pvit_00680 Pogona vitticeps Pvit_00680 I 0.844
Pvit_18616 Pogona vitticeps Pvit_18616 I 0.891
SMAR002779 Strigamia maritima SMAR002779 I 0.783
SPU_004414 Strongylocentrotus purpuratus SPU_004414 I 0.823
Tal_R002658 Tyto alba Tal_R002658 I 0.891
Tal_R009182 Tyto alba Tal_R009182 I 0.844
tetur19g00770 Tetranychus urticae tetur19g00770 I 0.784
dbp.L Xenopus laevis XB-GENE-6256610 I 0.823
hlf Xenopus tropicalis XB-GENE-955698 I 0.829
tef Xenopus tropicalis XB-GENE-962732 I 0.803
tef.S Xenopus laevis XB-GENE-962737 I 0.836
XP_002937859 Xenopus tropicalis XP_002937859 I 0.829