CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0799s0011
(
Capsella grandiflora
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Cagra.0799s0011
T071473_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BZIP44
M06756_2.00
Arabidopsis thaliana
DWGMTGACGTGGC
GCCACGTCAKCWH
Dap-seq
OMalley et al.(2016)
bZIP44_colamp_a
0.782
0.944
BZIP44
M06757_2.00
Arabidopsis thaliana
DDWGMTGACGTGGCM
KGCCACGTCAKCWHH
Dap-seq
OMalley et al.(2016)
bZIP44_col
0.782
0.944
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0799s0011.1.p
bZIP
40
93
DERKRKRKLSNRESARRSRMRKQKHLDDLTVQVTHLRKENAQLVAGIAVTTQHY
Links
Other
bZIP
family TFs
Other
Capsella grandiflora
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10021012m.g
Capsella rubella
Carubv10021012m.g
I
0.831
Bostr.3288s0189
Boechera stricta
Bostr.3288s0189
I
0.792
AtbZIP44
Arabidopsis lyrata
scaffold_202483.1
I
0.782
BZIP44
Arabidopsis thaliana
AT1G75390
D
0.782