CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10001450m.g
(
Capsella rubella
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Carubv10001450m.g
T071542_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BZIP63
M01787_2.00
Arabidopsis thaliana
NNNWSACGTGKN
NMCACGTSWNNN
PBM
Weirauch et al.(2014)
pTH7300
0.827
0.983
estExt_Genewise1.C_2060077
M01832_2.00
Physcomitrella patens
NNHSACGTGKNN
NNMCACGTSDNN
PBM
Weirauch et al.(2014)
pTH8666
0.794
0.724
PK05128.1
M01154_2.00
Cannabis sativa
NNNDBGTRKN
NMYACVHNNN
PBM
Lambert et al.(2019)
pTH10099
0.793
0.793
CPRF2_PETCR
M10069_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF2_01
0.789
0.764
CPRF2_PETCR
M10070_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF2_Q2
0.789
0.764
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10001450m
bZIP
163
217
TNVKRVKRMLSNRESARRSRRRKQAHLSELETQLRVENSKLMKGLTDVTQTFNDA
Carubv10001464m
bZIP
165
220
VKRVKRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDAAVENR
Carubv10001474m
bZIP
156
213
TNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDA
Links
Other
bZIP
family TFs
Other
Capsella rubella
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10004611m.g
Eutrema salsugineum
Thhalv10004611m.g
I
0.827
BZIP63
Arabidopsis thaliana
AT5G28770
D
0.827
BZO2H3
Arabidopsis lyrata
fgenesh2_kg.6__2797__AT5G28770.2
I
0.827
Cagra.5456s0001
Capsella grandiflora
Cagra.5456s0001
I
0.827
Bostr.25517s0001
Boechera stricta
Bostr.25517s0001
I
0.825
SapurV1A.0110s0140
Salix purpurea
SapurV1A.0110s0140
I
0.813
Bra020620
Brassica rapa
Bra020620
I
0.808
Bra010010
Brassica rapa
Bra010010
I
0.808
Bo2g151850
Brassica oleracea
Bo2g151850
I
0.808
OGLUM12G19660
Oryza glumaepatula
OGLUM12G19660
I
0.805
ONIVA12G16860
Oryza nivara
ONIVA12G16860
I
0.805
ORUFI12G20050
Oryza rufipogon
ORUFI12G20050
I
0.805
OBART12G18120
Oryza barthii
OBART12G18120
I
0.805
OPUNC12G16360
Oryza punctata
OPUNC12G16360
I
0.805
OS12G0601800
Oryza sativa
OS12G0601800
I
0.805
BGIOSGA037742
Oryza indica
BGIOSGA037742
I
0.805
LPERR12G15130
Leersia perrieri
LPERR12G15130
I
0.805
GLYMA19G43420
Glycine max
GLYMA19G43420
I
0.797
orange1.1g012287m.g
Citrus sinensis
orange1.1g012287m.g
I
0.797
Gorai.007G277300
Gossypium raimondii
Gorai.007G277300
I
0.797
GLYMA03G40730
Glycine max
GLYMA03G40730
I
0.797
Solyc01g097330.2
Solanum lycopersicum
Solyc01g097330.2
I
0.797
gene16561-v1.0-hybrid
Fragaria vesca
gene16561-v1.0-hybrid
I
0.797
BZO2H3
Vitis vinifera
VIT_14s0030g02200
I
0.797
PGSC0003DMG400019455
Solanum tuberosum
PGSC0003DMG400019455
I
0.797
MTR_7g115120
Medicago truncatula
MTR_7g115120
I
0.797
POPTR_0013s03800
Populus trichocarpa
POPTR_0013s03800
I
0.797
GSMUA_Achr4G28530_001
Musa acuminata
GSMUA_Achr4G28530_001
I
0.797
orange1.1g013166m.g
Citrus sinensis
orange1.1g013166m.g
I
0.796
Ciclev10020133m.g
Citrus clementina
Ciclev10020133m.g
I
0.796
cassava22706.valid.m1
Manihot esculenta
cassava22706.valid.m1
I
0.795
29598.m000468
Ricinus communis
29598.m000468
I
0.794
estExt_Genewise1.C_2060077
Physcomitrella patens
estExt_Genewise1.C_2060077
D
0.794
mgf009803m
Mimulus guttatus
mgf009803m
I
0.794
TCM_026349
Theobroma cacao
TCM_026349
I
0.794
POPTR_0005s05470
Populus trichocarpa
POPTR_0005s05470
I
0.794
Ca_01234
Cicer arietinum
Ca_01234
I
0.794
PRUPE_ppa005585mg
Prunus persica
PRUPE_ppa005585mg
I
0.794
SapurV1A.0729s0180
Salix purpurea
SapurV1A.0729s0180
I
0.794
Gorai.004G246700
Gossypium raimondii
Gorai.004G246700
I
0.793
Aquca_017_00582
Aquilegia coerulea
Aquca_017_00582
I
0.793
PK05128.1
Cannabis sativa
PK05128.1
D
0.793
Ca_03753
Cicer arietinum
Ca_03753
I
0.793
MTR_1g080920
Medicago truncatula
MTR_1g080920
I
0.793
OB12G24740
Oryza brachyantha
OB12G24740
I
0.793
GLYMA20G36750
Glycine max
GLYMA20G36750
I
0.793
GLYMA10G30410
Glycine max
GLYMA10G30410
I
0.793
Bo7g093030
Brassica oleracea
Bo7g093030
I
0.793
Lus10006590.g
Linum usitatissimum
Lus10006590.g
I
0.792
cassava18571.valid.m1
Manihot esculenta
cassava18571.valid.m1
I
0.792
Cucsa.289120
Cucumis sativus
Cucsa.289120
I
0.791
Eucgr.H04338
Eucalyptus grandis
Eucgr.H04338
I
0.791
Cla011478
Citrullus lanatus
Cla011478
I
0.790
Cucsa.133290
Cucumis sativus
Cucsa.133290
I
0.790
Cla020112
Citrullus lanatus
Cla020112
I
0.790
CPRF2_PETCR
Petroselinum crispum
CPRF2_PETCR
D
0.789
Ciclev10001051m.g
Citrus clementina
Ciclev10001051m.g
I
0.789
ATBZIP9
Vitis vinifera
VIT_04s0008g02750
I
0.788
chr5.LjT29J15.10.nc
Lotus japonicus
chr5.LjT29J15.10.nc
I
0.785
Lus10015913.g
Linum usitatissimum
Lus10015913.g
I
0.784
Pm003522
Prunus mume
Pm003522
I
0.784
mgf012838m
Mimulus guttatus
mgf012838m
I
0.784
MDP0000270365
Malus domestica
MDP0000270365
I
0.783