Carubv10003520m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10003520m.g T071547_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HY5
M06790_2.00
Arabidopsis thaliana
DNHGVTGACGTSDMN

NKHSACGTCABCDNH
Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a
0.830 1.000
HY5
M08407_2.00
Arabidopsis thaliana
NNHGMCACGTGKCDNN

NNHGMCACGTGKCDNN
ChIP-chip
Mathelier et al.(2014)
MA0551.1
0.830 1.000
HY5
M09919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HY5_01
0.830 1.000
Q39895_SOYBN
M10048_2.00
Glycine max Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_01
0.830 0.869
Q39895_SOYBN
M10049_2.00
Glycine max Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_02
0.830 0.869
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003520m bZIP 86 146

Links

Other bZIP family TFs
Other Capsella rubella TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05429 Aegilops tauschii F775_05429 I 0.783
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.830
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.830
HY5 Arabidopsis thaliana AT5G11260 D 0.830
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.791
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.830
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.830
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.800
Bo9g171430 Brassica oleracea Bo9g171430 I 0.822
Bo2g010330 Brassica oleracea Bo2g010330 I 0.822
Bra023317 Brassica rapa Bra023317 I 0.822
Bra008976 Brassica rapa Bra008976 I 0.822
PK17235.1 Cannabis sativa PK17235.1 I 0.830
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.830
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.830
Ca_21380 Cicer arietinum Ca_21380 I 0.830
Cla022656 Citrullus lanatus Cla022656 I 0.830
Cla021273 Citrullus lanatus Cla021273 I 0.822
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.830
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.830
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.811
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.830
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.830
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.830
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.830
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.830
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.830
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.830
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.830
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.830
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.786
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.783
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.830
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.830
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.817
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.817
MDP0000264514 Malus domestica MDP0000264514 I 0.830
MDP0000586302 Malus domestica MDP0000586302 I 0.830
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.830
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.830
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.806
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.817
mgf014305m Mimulus guttatus mgf014305m I 0.822
mgf012104m Mimulus guttatus mgf012104m I 0.817
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.783
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.826
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.830
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.810
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.830
OBART02G07840 Oryza barthii OBART02G07840 I 0.830
OBART06G20230 Oryza barthii OBART06G20230 I 0.799
OB02G17160 Oryza brachyantha OB02G17160 I 0.830
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.830
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.830
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.799
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.799
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.830
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.797
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.783
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.799
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.830
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.830
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.799
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.830
OS02G0203000 Oryza sativa OS02G0203000 I 0.830
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.820
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.811
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.811
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.818
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.830
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.830
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.830
29848.m004650 Ricinus communis 29848.m004650 I 0.830
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.826
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.811
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.811
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.805
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.817
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.805
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.817
Si018524m.g Setaria italica Si018524m.g I 0.820
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.830
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.830
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.820
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.811
TCM_038392 Theobroma cacao TCM_038392 I 0.830
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.783
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.830
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.790
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.783
HY5 Vitis vinifera VIT_04s0008g05210 I 0.830
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.820
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.811