Carubv10009673m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10009673m.g T071562_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtbZIP52
M06746_2.00
Arabidopsis thaliana
DTGMCAGCYBDNHH

DDNHVRGCTGKCAH
Dap-seq
OMalley et al.(2016)
bZIP52_colamp_a
0.846 1.000
AtbZIP52
M06747_2.00
Arabidopsis thaliana
DTGMCAGCYKDNHN

NDNHMRGCTGKCAH
Dap-seq
OMalley et al.(2016)
bZIP52_col_v31
0.846 1.000
PK16335.1
M01157_2.00
Cannabis sativa
NNNNKACAGCTRN

NYAGCTGTMNNNN
PBM
Lambert et al.(2019)
pTH10187
0.832 0.919
PK00315.1
M01153_2.00
Cannabis sativa
NNGACAGCTRN

NYAGCTGTCNN
PBM
Lambert et al.(2019)
pTH10085
0.832 0.903
BZIP18
M01777_2.00
Arabidopsis thaliana
NDMCARNHNN

NNDNYTGKHN
PBM
Weirauch et al.(2014)
pTH7316
0.817 0.871
BZIP18
M06768_2.00
Arabidopsis thaliana
DTGMCAGCTDD

HHAGCTGKCAH
Dap-seq
OMalley et al.(2016)
bZIP18_colamp_a
0.817 0.871
BZIP18
M06769_2.00
Arabidopsis thaliana
TGMCAGCTKKN

NMMAGCTGKCA
Dap-seq
OMalley et al.(2016)
bZIP18_col_v31
0.817 0.871
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009670m bZIP 147 208
Carubv10009673m bZIP 147 208

Links

Other bZIP family TFs
Other Capsella rubella TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002363 Ricinus communis 29729.m002363 I 0.814
29804.m001495 Ricinus communis 29804.m001495 I 0.832
AMTR_s00077p00070990 Amborella trichopoda AMTR_s00077p00070990 I 0.832
Aquca_004_00525 Aquilegia coerulea Aquca_004_00525 I 0.832
Aquca_045_00222 Aquilegia coerulea Aquca_045_00222 I 0.827
AtbZIP52 Arabidopsis lyrata Al_scaffold_0001_623 I 0.846
AtbZIP52 Vitis vinifera VIT_06s0004g08070 I 0.832
AtbZIP52 Arabidopsis thaliana AT1G06850 D 0.846
BGIOSGA012577 Oryza indica BGIOSGA012577 I 0.832
BGIOSGA023710 Oryza indica BGIOSGA023710 I 0.832
Bo4g012700 Brassica oleracea Bo4g012700 I 0.817
Bo4g190320 Brassica oleracea Bo4g190320 I 0.817
Bo8g007220 Brassica oleracea Bo8g007220 I 0.846
Bo8g114410 Brassica oleracea Bo8g114410 I 0.846
Bostr.25219s0275 Boechera stricta Bostr.25219s0275 I 0.846
Bostr.9345s0072 Boechera stricta Bostr.9345s0072 I 0.817
Bra004582 Brassica rapa Bra004582 I 0.817
Bra016980 Brassica rapa Bra016980 I 0.817
Bra030663 Brassica rapa Bra030663 I 0.846
Bra031541 Brassica rapa Bra031541 I 0.846
BZIP18 Arabidopsis thaliana AT2G40620 D 0.817
Cagra.1642s0027 Capsella grandiflora Cagra.1642s0027 I 0.817
Cagra.1671s0308 Capsella grandiflora Cagra.1671s0308 I 0.846
Carubv10025182m.g Capsella rubella Carubv10025182m.g I 0.817
cassava43674.valid.m1 Manihot esculenta cassava43674.valid.m1 I 0.819
Ca_04108 Cicer arietinum Ca_04108 I 0.790
Ca_08929 Cicer arietinum Ca_08929 I 0.832
Ca_15657 Cicer arietinum Ca_15657 I 0.832
Ciclev10032076m.g Citrus clementina Ciclev10032076m.g I 0.832
Cla007409 Citrullus lanatus Cla007409 I 0.832
Cla013626 Citrullus lanatus Cla013626 I 0.832
Cucsa.118900 Cucumis sativus Cucsa.118900 I 0.832
Cucsa.143950 Cucumis sativus Cucsa.143950 I 0.832
Eucgr.G03135 Eucalyptus grandis Eucgr.G03135 I 0.827
Eucgr.J00119 Eucalyptus grandis Eucgr.J00119 I 0.827
evm.TU.supercontig_19.62 Carica papaya evm.TU.supercontig_19.62 I 0.814
evm.TU.supercontig_2.298 Carica papaya evm.TU.supercontig_2.298 I 0.832
F775_31774 Aegilops tauschii F775_31774 I 0.783
F775_32183 Aegilops tauschii F775_32183 I 0.821
fgenesh2_kg.4__2179__AT2G40620.1 Arabidopsis lyrata fgenesh2_kg.4__2179__AT2G40620.1 I 0.817
gene21344-v1.0-hybrid Fragaria vesca gene21344-v1.0-hybrid I 0.832
gene28103-v1.0-hybrid Fragaria vesca gene28103-v1.0-hybrid I 0.818
GLYMA02G40270 Glycine max GLYMA02G40270 I 0.832
GLYMA11G30940 Glycine max GLYMA11G30940 I 0.832
GLYMA14G38460 Glycine max GLYMA14G38460 I 0.832
GLYMA18G05880 Glycine max GLYMA18G05880 I 0.832
Gorai.009G293600 Gossypium raimondii Gorai.009G293600 I 0.814
Gorai.010G218700 Gossypium raimondii Gorai.010G218700 I 0.813
Gorai.011G209200 Gossypium raimondii Gorai.011G209200 I 0.814
GRMZM2G062391 Zea mays GRMZM2G062391 I 0.821
GRMZM2G151295 Zea mays GRMZM2G151295 I 0.832
GSMUA_Achr11G23650_001 Musa acuminata GSMUA_Achr11G23650_001 I 0.821
GSMUA_Achr2G18830_001 Musa acuminata GSMUA_Achr2G18830_001 I 0.832
GSMUA_Achr5G29650_001 Musa acuminata GSMUA_Achr5G29650_001 I 0.808
GSMUA_AchrUn_randomG14020_001 Musa acuminata GSMUA_AchrUn_randomG14020_001 I 0.800
LjSGA_023972.1 Lotus japonicus LjSGA_023972.1 I 0.783
LPERR03G14390 Leersia perrieri LPERR03G14390 I 0.832
LPERR07G23230 Leersia perrieri LPERR07G23230 I 0.789
Lus10008605.g Linum usitatissimum Lus10008605.g I 0.832
Lus10009907.g Linum usitatissimum Lus10009907.g I 0.832
Lus10012881.g Linum usitatissimum Lus10012881.g I 0.814
Lus10030531.g Linum usitatissimum Lus10030531.g I 0.814
Lus10042211.g Linum usitatissimum Lus10042211.g I 0.832
MDP0000129203 Malus domestica MDP0000129203 I 0.832
MDP0000210251 Malus domestica MDP0000210251 I 0.832
MDP0000247372 Malus domestica MDP0000247372 I 0.784
MDP0000297791 Malus domestica MDP0000297791 I 0.821
MDP0000305387 Malus domestica MDP0000305387 I 0.821
mgf007830m Mimulus guttatus mgf007830m I 0.821
MLOC_44311 Hordeum vulgare MLOC_44311 I 0.832
MLOC_60045 Hordeum vulgare MLOC_60045 I 0.821
MTR_3g094020 Medicago truncatula MTR_3g094020 I 0.790
MTR_3g467120 Medicago truncatula MTR_3g467120 I 0.832
MTR_5g075390 Medicago truncatula MTR_5g075390 I 0.832
OB03G26210 Oryza brachyantha OB03G26210 I 0.789
OB07G31840 Oryza brachyantha OB07G31840 I 0.789
OBART03G16510 Oryza barthii OBART03G16510 I 0.789
OBART07G26390 Oryza barthii OBART07G26390 I 0.832
OGLUM07G26420 Oryza glumaepatula OGLUM07G26420 I 0.832
OLONG_008214 Oryza longistaminata OLONG_008214 I 0.789
OLONG_019327 Oryza longistaminata OLONG_019327 I 0.789
OMERI03G14760 Oryza meridionalis OMERI03G14760 I 0.832
OMERI07G23010 Oryza meridionalis OMERI07G23010 I 0.789
ONIVA03G17500 Oryza nivara ONIVA03G17500 I 0.832
ONIVA07G26100 Oryza nivara ONIVA07G26100 I 0.832
OPUNC03G15960 Oryza punctata OPUNC03G15960 I 0.832
OPUNC07G24840 Oryza punctata OPUNC07G24840 I 0.832
orange1.1g020026m.g Citrus sinensis orange1.1g020026m.g I 0.832
ORGLA03G0157900 Oryza glaberrima ORGLA03G0157900 I 0.783
ORGLA07G0207300 Oryza glaberrima ORGLA07G0207300 I 0.789
ORUFI03G17050 Oryza rufipogon ORUFI03G17050 I 0.832
Pavir.Bb03755 Panicum virgatum Pavir.Bb03755 I 0.819
Pavir.Ib01574 Panicum virgatum Pavir.Ib01574 I 0.832
Pavir.J07252 Panicum virgatum Pavir.J07252 I 0.783
PDK_20s1367981g001 Phoenix dactylifera PDK_20s1367981g001 I 0.783
PGSC0003DMG400016651 Solanum tuberosum PGSC0003DMG400016651 I 0.827
PGSC0003DMG400027599 Solanum tuberosum PGSC0003DMG400027599 I 0.827
PK00315.1 Cannabis sativa PK00315.1 D 0.832
PK16335.1 Cannabis sativa PK16335.1 D 0.832
Pm000251 Prunus mume Pm000251 I 0.832
Pm019060 Prunus mume Pm019060 I 0.832
POPTR_0013s09350 Populus trichocarpa POPTR_0013s09350 I 0.811
POPTR_0013s15280 Populus trichocarpa POPTR_0013s15280 I 0.830
POPTR_0019s15040 Populus trichocarpa POPTR_0019s15040 I 0.832
PRUPE_ppa006097mg Prunus persica PRUPE_ppa006097mg I 0.832
PRUPE_ppa007645mg Prunus persica PRUPE_ppa007645mg I 0.832
RF2B Oryza sativa OS03G0336200 I 0.832
SapurV1A.0182s0020 Salix purpurea SapurV1A.0182s0020 I 0.795
SapurV1A.0215s0230 Salix purpurea SapurV1A.0215s0230 I 0.832
SapurV1A.3480s0020 Salix purpurea SapurV1A.3480s0020 I 0.832
SapurV1A.4004s0010 Salix purpurea SapurV1A.4004s0010 I 0.795
Si030224m.g Setaria italica Si030224m.g I 0.819
Si036380m.g Setaria italica Si036380m.g I 0.832
Solyc06g048630.2 Solanum lycopersicum Solyc06g048630.2 I 0.827
TCM_042286 Theobroma cacao TCM_042286 I 0.832
TCM_045524 Theobroma cacao TCM_045524 I 0.819
Thhalv10008146m.g Eutrema salsugineum Thhalv10008146m.g I 0.846
Thhalv10016819m.g Eutrema salsugineum Thhalv10016819m.g I 0.817
Traes_2AS_3B7BE6FDC Triticum aestivum Traes_2AS_3B7BE6FDC I 0.789
Traes_2BS_1B0F27580 Triticum aestivum Traes_2BS_1B0F27580 I 0.829
Traes_2DS_93EAEC654 Triticum aestivum Traes_2DS_93EAEC654 I 0.832
Traes_4AS_45B416B25 Triticum aestivum Traes_4AS_45B416B25 I 0.821
Traes_4BL_9422485B3 Triticum aestivum Traes_4BL_9422485B3 I 0.821
Traes_4DL_19DC0CA31 Triticum aestivum Traes_4DL_19DC0CA31 I 0.821
VIT_13s0067g02900 Vitis vinifera VIT_13s0067g02900 I 0.827