CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene04504-v1.0-hybrid
(
Fragaria vesca
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
gene04504-v1.0-hybrid
T071816_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATBZIP42
M06775_2.00
Arabidopsis thaliana
TGCTGACGTGGM
KCCACGTCAGCA
Dap-seq
OMalley et al.(2016)
bZIP42_col_a
0.846
0.806
ATBZIP42
M06776_2.00
Arabidopsis thaliana
TGCTGACGTGGCV
BGCCACGTCAGCA
Dap-seq
OMalley et al.(2016)
bZIP42_colamp_a
0.846
0.806
OS02G0266800
M10046_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RITA1_01
0.801
0.484
OS02G0728001
M01826_2.00
Oryza sativa
NHCACGTGKNN
NNMCACGTGDN
PBM
Weirauch et al.(2014)
pTH8334
0.787
0.629
OS02G0728001
M01827_2.00
Oryza sativa
WSACGTGG
CCACGTSW
PBM
Weirauch et al.(2014)
pTH8737
0.787
0.629
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna04504.1-v1.0-hybrid
bZIP
93
154
DQRKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHSLIDRLNHVSESHDKVLEENA
Links
Other
bZIP
family TFs
Other
Fragaria vesca
TFs
201 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy