CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G259700
(
Gossypium raimondii
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Gorai.005G259700
T071923_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.786
0.547
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.788
0.655
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.788
0.655
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.784
0.547
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.785
0.692
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G259700.1
bZIP
211
277
KATQQKQKRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRREECTLQAELNKERFKQLMEK
Gorai.005G259700.2
bZIP
211
274
KATQQKQKRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRREEAELNKERFKQLMEKL
Gorai.005G259700.3
bZIP
211
265
KATQQKQKRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRREELMEKLV
Gorai.005G259700.4
bZIP
211
245
KATQQKQKRMIKNRESAARSRERKQVRFSFLEIPF
Gorai.005G259700.5
bZIP
211
241
KATQQKQKRMIKNRESAARSRERKQVRHILL
Gorai.005G259700.6
bZIP
211
263
KATQQKQKRMIKNRESAARSRERKQAYTVELESMVTHLEEENARLRREEVYRL
Links
Other
bZIP
family TFs
Other
Gossypium raimondii
TFs
220 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000706379
Malus domestica
MDP0000706379
I
0.861
Ciclev10002029m.g
Citrus clementina
Ciclev10002029m.g
I
0.861
Gorai.002G207000
Gossypium raimondii
Gorai.002G207000
I
0.861
TCM_006432
Theobroma cacao
TCM_006432
I
0.861
GLYMA05G25200
Glycine max
GLYMA05G25200
I
0.859
PGSC0003DMG400029774
Solanum tuberosum
PGSC0003DMG400029774
I
0.850
mgf009464m
Mimulus guttatus
mgf009464m
N
0.850
Solyc01g104650.2
Solanum lycopersicum
Solyc01g104650.2
I
0.850
GLYMA08G08220
Glycine max
GLYMA08G08220
N
0.844
Cucsa.184670
Cucumis sativus
Cucsa.184670
I
0.836
gene11837-v1.0-hybrid
Fragaria vesca
gene11837-v1.0-hybrid
N
0.834
MDP0000198495
Malus domestica
MDP0000198495
I
0.827
MTR_1g098590
Medicago truncatula
MTR_1g098590
N
0.826
GLYMA10G36820
Glycine max
GLYMA10G36820
N
0.826
OLONG_014546
Oryza longistaminata
OLONG_014546
I
0.825
ONIVA04G25730
Oryza nivara
ONIVA04G25730
I
0.825
ORGLA01G0317900
Oryza glaberrima
ORGLA01G0317900
I
0.825
OMERI01G34950
Oryza meridionalis
OMERI01G34950
I
0.825
OB01G46760
Oryza brachyantha
OB01G46760
I
0.825
GSMUA_Achr9G08900_001
Musa acuminata
GSMUA_Achr9G08900_001
N
0.825
LPERR01G32620
Leersia perrieri
LPERR01G32620
I
0.825
ORUFI01G41310
Oryza rufipogon
ORUFI01G41310
I
0.825
OBART01G37980
Oryza barthii
OBART01G37980
I
0.825
OGLUM01G42150
Oryza glumaepatula
OGLUM01G42150
I
0.825
OS01G0859300
Oryza sativa
OS01G0859300
I
0.825
BGIOSGA004837
Oryza indica
BGIOSGA004837
I
0.825
GRMZM2G168079
Zea mays
GRMZM2G168079
I
0.825
Eucgr.G00615
Eucalyptus grandis
Eucgr.G00615
I
0.824
Pavir.J35078
Panicum virgatum
Pavir.J35078
I
0.824
Pm004043
Prunus mume
Pm004043
I
0.824
PRUPE_ppa025544mg
Prunus persica
PRUPE_ppa025544mg
I
0.824
Cla000389
Citrullus lanatus
Cla000389
I
0.823
TRAES3BF111600130CFD_g
Triticum aestivum
TRAES3BF111600130CFD_g
I
0.823
MLOC_34679
Hordeum vulgare
MLOC_34679
I
0.823
F775_32479
Aegilops tauschii
F775_32479
I
0.823
Traes_3AL_FC5523394
Triticum aestivum
Traes_3AL_FC5523394
I
0.823
chr4.CM0337.330.nc
Lotus japonicus
chr4.CM0337.330.nc
I
0.822
SapurV1A.0134s0060
Salix purpurea
SapurV1A.0134s0060
I
0.820
SapurV1A.0625s0150
Salix purpurea
SapurV1A.0625s0150
I
0.820
POPTR_0002s06800
Populus trichocarpa
POPTR_0002s06800
I
0.820
POPTR_0005s21500
Populus trichocarpa
POPTR_0005s21500
I
0.820
PGSC0003DMG400023897
Solanum tuberosum
PGSC0003DMG400023897
N
0.817
29955.m001177
Ricinus communis
29955.m001177
I
0.816
VIT_12s0055g00420
Vitis vinifera
VIT_12s0055g00420
I
0.813
TRIUR3_31111
Triticum urartu
TRIUR3_31111
I
0.811
chr6.CM0314.840.nd
Lotus japonicus
chr6.CM0314.840.nd
N
0.810
TRAES3BF099600130CFD_g
Triticum aestivum
TRAES3BF099600130CFD_g
I
0.807
GSMUA_Achr3G22710_001
Musa acuminata
GSMUA_Achr3G22710_001
I
0.806
Pavir.J36143
Panicum virgatum
Pavir.J36143
I
0.805
GRMZM2G132868
Zea mays
GRMZM2G132868
I
0.805
Pavir.J06257
Panicum virgatum
Pavir.J06257
I
0.805
Thhalv10009710m.g
Eutrema salsugineum
Thhalv10009710m.g
N
0.804
TRAES3BF111600160CFD_g
Triticum aestivum
TRAES3BF111600160CFD_g
I
0.803
Cagra.1671s0014
Capsella grandiflora
Cagra.1671s0014
N
0.803
Carubv10011573m.g
Capsella rubella
Carubv10011573m.g
N
0.803
Bra015281
Brassica rapa
Bra015281
N
0.802
MDP0000208334
Malus domestica
MDP0000208334
N
0.802
Bo5g004230
Brassica oleracea
Bo5g004230
N
0.802
Aquca_023_00151
Aquilegia coerulea
Aquca_023_00151
I
0.802
MTR_4g094390
Medicago truncatula
MTR_4g094390
I
0.801
GSMUA_Achr10G10440_001
Musa acuminata
GSMUA_Achr10G10440_001
I
0.801
GSMUA_Achr3G22470_001
Musa acuminata
GSMUA_Achr3G22470_001
I
0.800
BRADI2G21820
Brachypodium distachyon
BRADI2G21820
I
0.799
evm.TU.supercontig_33.182
Carica papaya
evm.TU.supercontig_33.182
I
0.799
GSMUA_Achr8G07740_001
Musa acuminata
GSMUA_Achr8G07740_001
I
0.799
Bra014668
Brassica rapa
Bra014668
I
0.799
Bo4g112690
Brassica oleracea
Bo4g112690
I
0.799
Bra007274
Brassica rapa
Bra007274
I
0.799
Bra007276
Brassica rapa
Bra007276
I
0.799
Bo8g091160
Brassica oleracea
Bo8g091160
I
0.799
Bo6g072380
Brassica oleracea
Bo6g072380
I
0.799
Bra003253
Brassica rapa
Bra003253
I
0.799
TCM_000152
Theobroma cacao
TCM_000152
I
0.798
gene14556-v1.0-hybrid
Fragaria vesca
gene14556-v1.0-hybrid
I
0.798
Solyc10g050210.1
Solanum lycopersicum
Solyc10g050210.1
I
0.796
OPUNC01G36800
Oryza punctata
OPUNC01G36800
I
0.794
TRIUR3_33995
Triticum urartu
TRIUR3_33995
I
0.794
OS03G0322700
Oryza sativa
OS03G0322700
I
0.792
Bo7g067030
Brassica oleracea
Bo7g067030
N
0.792
GLYMA15G05440
Glycine max
GLYMA15G05440
N
0.792
GLYMA08G19590
Glycine max
GLYMA08G19590
N
0.792
AMTR_s00114p00031980
Amborella trichopoda
AMTR_s00114p00031980
I
0.792
fgenesh2_kg.1__328__AT1G03970.1
Arabidopsis lyrata
fgenesh2_kg.1__328__AT1G03970.1
N
0.792
GBF4
Arabidopsis thaliana
AT1G03970
N
0.792
TCM_044596
Theobroma cacao
TCM_044596
I
0.791
PRUPE_ppa008716mg
Prunus persica
PRUPE_ppa008716mg
I
0.790
Cucsa.364380
Cucumis sativus
Cucsa.364380
I
0.790
mgf011003m
Mimulus guttatus
mgf011003m
I
0.790
GSMUA_Achr11G15610_001
Musa acuminata
GSMUA_Achr11G15610_001
I
0.790
Gorai.009G301400
Gossypium raimondii
Gorai.009G301400
I
0.790
VIT_13s0175g00120
Vitis vinifera
VIT_13s0175g00120
I
0.790
gene00393-v1.0-hybrid
Fragaria vesca
gene00393-v1.0-hybrid
I
0.790
Gorai.009G301200
Gossypium raimondii
Gorai.009G301200
I
0.790
Traes_5DL_73CE92096
Triticum aestivum
Traes_5DL_73CE92096
I
0.790
MLOC_4554
Hordeum vulgare
MLOC_4554
I
0.790
mgf002556m
Mimulus guttatus
mgf002556m
I
0.790
Lus10028575.g
Linum usitatissimum
Lus10028575.g
N
0.790
BRADI4G43850
Brachypodium distachyon
BRADI4G43850
I
0.790
Traes_5BL_FB4EDEA83
Triticum aestivum
Traes_5BL_FB4EDEA83
I
0.790
AMTR_s00040p00057740
Amborella trichopoda
AMTR_s00040p00057740
I
0.789
orange1.1g021146m.g
Citrus sinensis
orange1.1g021146m.g
I
0.789
ONIVA05G21710
Oryza nivara
ONIVA05G21710
I
0.789
OGLUM05G22240
Oryza glumaepatula
OGLUM05G22240
I
0.789
mgf020385m
Mimulus guttatus
mgf020385m
N
0.789
Sb09g023920
Sorghum bicolor
Sb09g023920
I
0.788
Cagra.0578s0014
Capsella grandiflora
Cagra.0578s0014
I
0.788
Eucgr.J00320
Eucalyptus grandis
Eucgr.J00320
I
0.788
AREB3
Arabidopsis lyrata
scaffold_502836.1
I
0.788
BGIOSGA026419
Oryza indica
BGIOSGA026419
I
0.788
Bra016953
Brassica rapa
Bra016953
I
0.788
GRMZM2G161009
Zea mays
GRMZM2G161009
I
0.788
Si002173m.g
Setaria italica
Si002173m.g
I
0.788
Ciclev10012205m.g
Citrus clementina
Ciclev10012205m.g
I
0.788
Solyc10g081350.1
Solanum lycopersicum
Solyc10g081350.1
I
0.788
PGSC0003DMG400006211
Solanum tuberosum
PGSC0003DMG400006211
I
0.788
ONIVA07G26520
Oryza nivara
ONIVA07G26520
I
0.788
Pavir.Eb03523
Panicum virgatum
Pavir.Eb03523
I
0.788
OB07G32300
Oryza brachyantha
OB07G32300
I
0.788
OPUNC07G25180
Oryza punctata
OPUNC07G25180
I
0.788
OGLUM07G26780
Oryza glumaepatula
OGLUM07G26780
I
0.788
OMERI07G23410
Oryza meridionalis
OMERI07G23410
I
0.788
OBART07G26790
Oryza barthii
OBART07G26790
I
0.788
Pavir.J38875
Panicum virgatum
Pavir.J38875
I
0.788
GLYMA03G00580
Glycine max
GLYMA03G00580
I
0.788
DPBF3
Arabidopsis thaliana
AT3G56850
D
0.788
SapurV1A.0036s0930
Salix purpurea
SapurV1A.0036s0930
I
0.788
SapurV1A.0070s0720
Salix purpurea
SapurV1A.0070s0720
I
0.788
orange1.1g020697m.g
Citrus sinensis
orange1.1g020697m.g
I
0.788
Bostr.20505s0068
Boechera stricta
Bostr.20505s0068
I
0.788
PGSC0003DMG400028121
Solanum tuberosum
PGSC0003DMG400028121
I
0.788
GLYMA19G30230
Glycine max
GLYMA19G30230
I
0.788
GSMUA_AchrUn_randomG12190_001
Musa acuminata
GSMUA_AchrUn_randomG12190_001
I
0.788
Thhalv10006121m.g
Eutrema salsugineum
Thhalv10006121m.g
I
0.788
OS07G0686100
Oryza sativa
OS07G0686100
I
0.788
MTR_7g088090
Medicago truncatula
MTR_7g088090
I
0.788
ORUFI07G27740
Oryza rufipogon
ORUFI07G27740
I
0.788
GLYMA15G35080
Glycine max
GLYMA15G35080
I
0.788
LPERR05G16840
Leersia perrieri
LPERR05G16840
I
0.787
GLYMA08G24340
Glycine max
GLYMA08G24340
I
0.787
GSMUA_Achr8G21560_001
Musa acuminata
GSMUA_Achr8G21560_001
I
0.787
OB05G28440
Oryza brachyantha
OB05G28440
I
0.787
cassava22423.valid.m1
Manihot esculenta
cassava22423.valid.m1
I
0.787
Ca_23748
Cicer arietinum
Ca_23748
I
0.787
SapurV1A.0036s0950
Salix purpurea
SapurV1A.0036s0950
I
0.787
OBART05G21000
Oryza barthii
OBART05G21000
I
0.787
OMERI05G18990
Oryza meridionalis
OMERI05G18990
I
0.787
ORUFI05G22290
Oryza rufipogon
ORUFI05G22290
I
0.787
MDP0000215106
Malus domestica
MDP0000215106
I
0.787
MDP0000273211
Malus domestica
MDP0000273211
I
0.787
F775_17024
Aegilops tauschii
F775_17024
I
0.787
OS05G0489700
Oryza sativa
OS05G0489700
I
0.787
Lus10028889.g
Linum usitatissimum
Lus10028889.g
I
0.787
BRADI2G53060
Brachypodium distachyon
BRADI2G53060
I
0.787
BGIOSGA020087
Oryza indica
BGIOSGA020087
I
0.787
OLONG_003399
Oryza longistaminata
OLONG_003399
I
0.787
F775_28711
Aegilops tauschii
F775_28711
I
0.787
Eucgr.K01706
Eucalyptus grandis
Eucgr.K01706
I
0.787
Lus10008927.g
Linum usitatissimum
Lus10008927.g
I
0.787
Traes_3DL_20ED2EA4C
Triticum aestivum
Traes_3DL_20ED2EA4C
I
0.787
TRAES3BF001900070CFD_g
Triticum aestivum
TRAES3BF001900070CFD_g
I
0.787
AMTR_s00101p00038080
Amborella trichopoda
AMTR_s00101p00038080
I
0.786
Carubv10018770m.g
Capsella rubella
Carubv10018770m.g
I
0.786
BGIOSGA010835
Oryza indica
BGIOSGA010835
I
0.786
Pavir.Ib01001
Panicum virgatum
Pavir.Ib01001
I
0.786
Pavir.Bb03699
Panicum virgatum
Pavir.Bb03699
I
0.786
Pavir.Ba00263
Panicum virgatum
Pavir.Ba00263
I
0.786
Ciclev10001893m.g
Citrus clementina
Ciclev10001893m.g
I
0.786
Traes_1BL_DE2CF9613
Triticum aestivum
Traes_1BL_DE2CF9613
I
0.786
Sb01g036810
Sorghum bicolor
Sb01g036810
I
0.786
POPTR_0010s25460
Populus trichocarpa
POPTR_0010s25460
I
0.786
Sb02g043620
Sorghum bicolor
Sb02g043620
I
0.786
Sb03g040510
Sorghum bicolor
Sb03g040510
I
0.786
MTR_2g086390
Medicago truncatula
MTR_2g086390
N
0.786
MTR_3g010660
Medicago truncatula
MTR_3g010660
I
0.786
POPTR_0010s25440
Populus trichocarpa
POPTR_0010s25440
I
0.786
POPTR_0008s01130
Populus trichocarpa
POPTR_0008s01130
I
0.786
ONIVA03G16560
Oryza nivara
ONIVA03G16560
I
0.786
OPUNC01G33790
Oryza punctata
OPUNC01G33790
I
0.786
ORGLA03G0149400
Oryza glaberrima
ORGLA03G0149400
I
0.786
OMERI03G14020
Oryza meridionalis
OMERI03G14020
I
0.786
OGLUM03G15730
Oryza glumaepatula
OGLUM03G15730
I
0.786
F775_31964
Aegilops tauschii
F775_31964
I
0.786
Traes_1AL_1FFBFB058
Triticum aestivum
Traes_1AL_1FFBFB058
I
0.786
GRMZM2G077124
Zea mays
GRMZM2G077124
I
0.786
Traes_1DL_D9BA83221
Triticum aestivum
Traes_1DL_D9BA83221
I
0.786
Pm016826
Prunus mume
Pm016826
I
0.786
30226.m002055
Ricinus communis
30226.m002055
I
0.786
Cucsa.385090
Cucumis sativus
Cucsa.385090
I
0.786
Ca_08143
Cicer arietinum
Ca_08143
I
0.786
Cla013878
Citrullus lanatus
Cla013878
I
0.786
MLOC_16096
Hordeum vulgare
MLOC_16096
I
0.786
Traes_3AL_58F294736
Triticum aestivum
Traes_3AL_58F294736
I
0.786
TRIUR3_24203
Triticum urartu
TRIUR3_24203
I
0.786
TRIUR3_06726
Triticum urartu
TRIUR3_06726
I
0.786
MLOC_6534
Hordeum vulgare
MLOC_6534
I
0.786
TRIUR3_12792
Triticum urartu
TRIUR3_12792
I
0.786
LPERR01G30010
Leersia perrieri
LPERR01G30010
I
0.785
Pavir.J34085
Panicum virgatum
Pavir.J34085
I
0.785
OB01G43630
Oryza brachyantha
OB01G43630
I
0.785
Pavir.J05672
Panicum virgatum
Pavir.J05672
I
0.785
F775_19301
Aegilops tauschii
F775_19301
I
0.785
Traes_3DL_E21790878
Triticum aestivum
Traes_3DL_E21790878
I
0.785
ORGLA01G0286100
Oryza glaberrima
ORGLA01G0286100
I
0.785
Si022639m.g
Setaria italica
Si022639m.g
I
0.784
OS01G0813100
Oryza sativa
OS01G0813100
I
0.784
MDP0000740787
Malus domestica
MDP0000740787
I
0.784
BGIOSGA000613
Oryza indica
BGIOSGA000613
I
0.784
chr5.CM0052.120.nc
Lotus japonicus
chr5.CM0052.120.nc
N
0.783
mgf015092m
Mimulus guttatus
mgf015092m
I
0.783
evm.TU.supercontig_21.207
Carica papaya
evm.TU.supercontig_21.207
N
0.783
OGLUM01G38810
Oryza glumaepatula
OGLUM01G38810
I
0.783
ORUFI01G38120
Oryza rufipogon
ORUFI01G38120
I
0.783
ONIVA01G39770
Oryza nivara
ONIVA01G39770
I
0.783
OMERI01G32080
Oryza meridionalis
OMERI01G32080
I
0.783
OLONG_002030
Oryza longistaminata
OLONG_002030
I
0.783
OBART01G34790
Oryza barthii
OBART01G34790
I
0.783
Si001731m.g
Setaria italica
Si001731m.g
I
0.782
Pm001315
Prunus mume
Pm001315
I
0.782
Bostr.26675s0358
Boechera stricta
Bostr.26675s0358
N
0.782