Pavir.Ba00224 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ba00224 T072316_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BZIP18
M01777_2.00 		Arabidopsis thaliana
NDMCARNHNN
NNDNYTGKHN		 PBM
Weirauch et al.(2014)
pTH7316 		0.787 0.964
BZIP18
M06768_2.00 		Arabidopsis thaliana
DTGMCAGCTDD
HHAGCTGKCAH		 Dap-seq
OMalley et al.(2016)
bZIP18_colamp_a 		0.787 0.964
BZIP18
M06769_2.00 		Arabidopsis thaliana
TGMCAGCTKKN
NMMAGCTGKCA		 Dap-seq
OMalley et al.(2016)
bZIP18_col_v31 		0.787 0.964
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00224.1.p bZIP 166 220

Links

Other bZIP family TFs
Other Panicum virgatum TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G293600 Gossypium raimondii Gorai.009G293600 I 0.789
evm.TU.supercontig_19.62 Carica papaya evm.TU.supercontig_19.62 I 0.789
29729.m002363 Ricinus communis 29729.m002363 I 0.789
Gorai.011G209200 Gossypium raimondii Gorai.011G209200 I 0.789
Lus10012881.g Linum usitatissimum Lus10012881.g I 0.789
Pavir.Bb03755 Panicum virgatum Pavir.Bb03755 I 0.789
Lus10030531.g Linum usitatissimum Lus10030531.g I 0.789
TCM_045524 Theobroma cacao TCM_045524 I 0.789
cassava43674.valid.m1 Manihot esculenta cassava43674.valid.m1 I 0.789
GRMZM2G149040 Zea mays GRMZM2G149040 I 0.789
BRADI1G17700 Brachypodium distachyon BRADI1G17700 I 0.789
Si030224m.g Setaria italica Si030224m.g I 0.789
Sb02g042990 Sorghum bicolor Sb02g042990 I 0.789
Bra004582 Brassica rapa Bra004582 I 0.787
Bo4g012700 Brassica oleracea Bo4g012700 I 0.787
Thhalv10016819m.g Eutrema salsugineum Thhalv10016819m.g I 0.787
BZIP18 Arabidopsis thaliana AT2G40620 D 0.787
fgenesh2_kg.4__2179__AT2G40620.1 Arabidopsis lyrata fgenesh2_kg.4__2179__AT2G40620.1 I 0.787
Cagra.1642s0027 Capsella grandiflora Cagra.1642s0027 I 0.787
Bostr.9345s0072 Boechera stricta Bostr.9345s0072 I 0.787
Carubv10025182m.g Capsella rubella Carubv10025182m.g I 0.787