Pavir.Ba02029 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ba02029 T072323_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN

NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.826 0.776
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN

NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.824 0.862
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH

DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.824 0.862
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN

NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.823 0.793
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN

NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.823 0.793
ABF4
M09911_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.823 0.793
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT

ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.816 0.638
ABF3
M09912_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.816 0.638
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN

NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
0.811 0.724
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN

NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
0.811 0.724
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC

GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
0.811 0.724
ABF1
M09906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
0.811 0.724
ABF1
M09907_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
0.811 0.724
ABF1
M09908_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
0.811 0.724
OS08G0471950
M10047_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.802 0.759
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba02029.1.p bZIP 274 331

Links

Other bZIP family TFs
Other Panicum virgatum TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ABF3 Arabidopsis thaliana AT4G34000 D 0.816
PK18009.1 Cannabis sativa PK18009.1 D 0.826
ABF2 Arabidopsis thaliana AT1G45249 D 0.824
ABF1 Arabidopsis thaliana AT1G49720 D 0.811
ABI5 Arabidopsis thaliana AT2G36270 D 0.811
ABF4 Arabidopsis thaliana AT3G19290 D 0.823
OS08G0471950 Oryza sativa OS08G0471950 D 0.802
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.824
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.808
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.797
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.824
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.809
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.790
30170.m013868 Ricinus communis 30170.m013868 I 0.824
30055.m001548 Ricinus communis 30055.m001548 I 0.807
29801.m003176 Ricinus communis 29801.m003176 I 0.819
29625.m000702 Ricinus communis 29625.m000702 I 0.788
Pm021430 Prunus mume Pm021430 I 0.831
Pm005288 Prunus mume Pm005288 I 0.832
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.833
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.833
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.782
mgf020824m Mimulus guttatus mgf020824m I 0.823
mgf015092m Mimulus guttatus mgf015092m I 0.801
mgf014602m Mimulus guttatus mgf014602m I 0.831
mgf007524m Mimulus guttatus mgf007524m I 0.831
mgf002176m Mimulus guttatus mgf002176m I 0.790
mgf002047m Mimulus guttatus mgf002047m I 0.831
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.836
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.791
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.797
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.823
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.833
Cla022926 Citrullus lanatus Cla022926 I 0.836
Cla017970 Citrullus lanatus Cla017970 I 0.794
Cla016272 Citrullus lanatus Cla016272 I 0.823
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.819
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.808
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I 0.788
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.803
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.816
Si030114m.g Setaria italica Si030114m.g I 0.838
Si017618m.g Setaria italica Si017618m.g I 0.790
Si013904m.g Setaria italica Si013904m.g I 0.835
Si006889m.g Setaria italica Si006889m.g I 0.792
Si001731m.g Setaria italica Si001731m.g I 0.792
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.792
TCM_007074 Theobroma cacao TCM_007074 I 0.831
TCM_022574 Theobroma cacao TCM_022574 I 0.802
TCM_033824 Theobroma cacao TCM_033824 I 0.818
Ca_06458 Cicer arietinum Ca_06458 I 0.810
Ca_01548 Cicer arietinum Ca_01548 I 0.822
Ca_00791 Cicer arietinum Ca_00791 I 0.785
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.824
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.783
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.814
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.794
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.811
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.783
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.783
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.783
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I 0.783
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.823
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.801
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.792
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.821
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.822
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.823
MDP0000701734 Malus domestica MDP0000701734 I 0.788
MDP0000296303 Malus domestica MDP0000296303 I 0.800
MDP0000248567 Malus domestica MDP0000248567 I 0.831
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.821
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.790
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.795
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.782
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.790
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.836
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.851
PK02169.1 Cannabis sativa PK02169.1 I 0.823
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.799
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.820
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.807
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.824
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.838
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.824
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.838
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.809
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.824
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.785
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.799
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.820
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.788
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.824
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.823
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.821
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.815
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.822
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.824
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.816
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.815
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.816
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.816
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.824
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.816
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.827
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.789
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.816
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.831
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.807
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.797
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.837
Gorai.006G155600 Gossypium raimondii Gorai.006G155600 I 0.782
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.834
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.816
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.833
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.802
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.829
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.822
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.808
OB01G46760 Oryza brachyantha OB01G46760 I 0.785
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.804
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.812
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.786
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.822
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.805
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.785
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.805
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.792
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.816
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.790
GLYMA10G08370 Glycine max GLYMA10G08370 I 0.788
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.820
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.815
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.818
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.787
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.822
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.820
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.818
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.783
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.842
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.811
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.813
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.802
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.785
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.826
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.784
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.822
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.822
Bo6g006970 Brassica oleracea Bo6g006970 I 0.824
Bo5g115300 Brassica oleracea Bo5g115300 I 0.820
Bo3g073080 Brassica oleracea Bo3g073080 I 0.844
Bo1g114840 Brassica oleracea Bo1g114840 I 0.805
Bo1g007700 Brassica oleracea Bo1g007700 I 0.801
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.813
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.837
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.805
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.813
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.813
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.785
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.821
Bo6g018480 Brassica oleracea Bo6g018480 I 0.809
Bo7g116570 Brassica oleracea Bo7g116570 I 0.805
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.816
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.815
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.808
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.824
F775_32479 Aegilops tauschii F775_32479 I 0.783
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.829
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.836
Bra040260 Brassica rapa Bra040260 I 0.824
Bra037533 Brassica rapa Bra037533 I 0.820
Bra022409 Brassica rapa Bra022409 I 0.820
Bra018800 Brassica rapa Bra018800 I 0.802
Bra011485 Brassica rapa Bra011485 I 0.794
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.802
OB02G40680 Oryza brachyantha OB02G40680 I 0.798
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.794
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.823
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I 0.782
OS09G0456200 Oryza sativa OS09G0456200 I 0.837
BZIP46 Oryza sativa OS06G0211200 I 0.791
BZIP23 Oryza sativa OS02G0766700 I 0.813
OS01G0859300 Oryza sativa OS01G0859300 I 0.785
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.791
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.805
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.813
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.787
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.837
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.805
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.822
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.819
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.820
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.800
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.794
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.796
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.831
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.799
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.824
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.809
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.838
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.790
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.824
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.816
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.813
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.813
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.801
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.837
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.802
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.813
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.813
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.787
OBART08G17810 Oryza barthii OBART08G17810 I 0.789
OBART06G07070 Oryza barthii OBART06G07070 I 0.813
OBART02G33770 Oryza barthii OBART02G33770 I 0.829
OBART01G37980 Oryza barthii OBART01G37980 I 0.787
OB09G19140 Oryza brachyantha OB09G19140 I 0.816
OB08G24950 Oryza brachyantha OB08G24950 I 0.824
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.795
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.785
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.785
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.837
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.805
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.813
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.801
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.813
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.787
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.813
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.837
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.813
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.813
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.785
OB06G16510 Oryza brachyantha OB06G16510 I 0.813