CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Bb02514
(
Panicum virgatum
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Pavir.Bb02514
T072333_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS02G0728001
M01826_2.00
Oryza sativa
NHCACGTGKNN
NNMCACGTGDN
PBM
Weirauch et al.(2014)
pTH8334
0.815
0.719
OS02G0728001
M01827_2.00
Oryza sativa
WSACGTGG
CCACGTSW
PBM
Weirauch et al.(2014)
pTH8737
0.815
0.719
ATBZIP42
M06775_2.00
Arabidopsis thaliana
TGCTGACGTGGM
KCCACGTCAGCA
Dap-seq
OMalley et al.(2016)
bZIP42_col_a
0.782
0.578
ATBZIP42
M06776_2.00
Arabidopsis thaliana
TGCTGACGTGGCV
BGCCACGTCAGCA
Dap-seq
OMalley et al.(2016)
bZIP42_colamp_a
0.782
0.578
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Bb02514.1.p
bZIP
166
229
AEDERRRRRMVSNRESARRSRMRKQRQLTELWAQVVHLRGTNRRLLDELNHAMRGCSDMCCENA
Links
Other
bZIP
family TFs
Other
Panicum virgatum
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ba01782
Panicum virgatum
Pavir.Ba01782
I
0.906
Si031238m.g
Setaria italica
Si031238m.g
I
0.894
Sb02g027410
Sorghum bicolor
Sb02g027410
I
0.877
GRMZM2G137532
Zea mays
GRMZM2G137532
N
0.849
LPERR08G15570
Leersia perrieri
LPERR08G15570
I
0.828
ONIVA08G20730
Oryza nivara
ONIVA08G20730
I
0.828
OBART08G18720
Oryza barthii
OBART08G18720
I
0.828
OMERI08G14760
Oryza meridionalis
OMERI08G14760
I
0.828
OGLUM08G19690
Oryza glumaepatula
OGLUM08G19690
I
0.828
ORGLA08G0162900
Oryza glaberrima
ORGLA08G0162900
I
0.828
ORUFI08G08020
Oryza rufipogon
ORUFI08G08020
I
0.828
BGIOSGA026766
Oryza indica
BGIOSGA026766
I
0.828
OS08G0487100
Oryza sativa
OS08G0487100
I
0.828
BRADI4G32920
Brachypodium distachyon
BRADI4G32920
I
0.826
GRMZM2G144480
Zea mays
GRMZM2G144480
I
0.824
OGLUM09G14340
Oryza glumaepatula
OGLUM09G14340
I
0.822
OBART09G13760
Oryza barthii
OBART09G13760
I
0.822
OBART09G13750
Oryza barthii
OBART09G13750
I
0.822
OLONG_013604
Oryza longistaminata
OLONG_013604
I
0.822
ONIVA09G14270
Oryza nivara
ONIVA09G14270
I
0.822
OPUNC09G12140
Oryza punctata
OPUNC09G12140
I
0.822
BGIOSGA029595
Oryza indica
BGIOSGA029595
I
0.822
OPUNC09G12240
Oryza punctata
OPUNC09G12240
I
0.822
OB09G20300
Oryza brachyantha
OB09G20300
I
0.822
LPERR09G10020
Leersia perrieri
LPERR09G10020
I
0.822
OS09G0474000
Oryza sativa
OS09G0474000
I
0.822
ORUFI09G14730
Oryza rufipogon
ORUFI09G14730
I
0.822
ORGLA09G0104900
Oryza glaberrima
ORGLA09G0104900
I
0.822
GRMZM2G020799
Zea mays
GRMZM2G020799
I
0.821
Traes_5DL_591F8EFBD
Triticum aestivum
Traes_5DL_591F8EFBD
I
0.819
Traes_5BL_C559EFC8A
Triticum aestivum
Traes_5BL_C559EFC8A
I
0.819
OS02G0728001
Oryza sativa
OS02G0728001
D
0.815
Si019897m.g
Setaria italica
Si019897m.g
I
0.815
ORUFI02G32700
Oryza rufipogon
ORUFI02G32700
I
0.815
ORGLA02G0265300
Oryza glaberrima
ORGLA02G0265300
I
0.815
OPUNC02G28720
Oryza punctata
OPUNC02G28720
I
0.815
OGLUM02G31690
Oryza glumaepatula
OGLUM02G31690
I
0.815
BGIOSGA008968
Oryza indica
BGIOSGA008968
I
0.815
ONIVA02G34180
Oryza nivara
ONIVA02G34180
I
0.815
OLONG_004835
Oryza longistaminata
OLONG_004835
I
0.815
OBART02G31030
Oryza barthii
OBART02G31030
I
0.815
OMERI02G29910
Oryza meridionalis
OMERI02G29910
I
0.815
OPUNC08G16670
Oryza punctata
OPUNC08G16670
I
0.811
Sb07g028960
Sorghum bicolor
Sb07g028960
I
0.809
AC186606.4_FG003
Zea mays
AC186606.4_FG003
I
0.809
Pavir.Fa00602
Panicum virgatum
Pavir.Fa00602
I
0.809
Sb07g028900
Sorghum bicolor
Sb07g028900
I
0.809
GSMUA_Achr6G36230_001
Musa acuminata
GSMUA_Achr6G36230_001
I
0.807
Pavir.Fb01824
Panicum virgatum
Pavir.Fb01824
I
0.806
Si014433m.g
Setaria italica
Si014433m.g
I
0.805
BRADI3G38840
Brachypodium distachyon
BRADI3G38840
N
0.804
MLOC_6062
Hordeum vulgare
MLOC_6062
N
0.804
PGSC0003DMG400007523
Solanum tuberosum
PGSC0003DMG400007523
I
0.802
MLOC_62430
Hordeum vulgare
MLOC_62430
I
0.800
Traes_6AL_E0ED0DE45
Triticum aestivum
Traes_6AL_E0ED0DE45
I
0.800
Traes_6DL_77ACE1279
Triticum aestivum
Traes_6DL_77ACE1279
I
0.800
PDK_20s1520551g003
Phoenix dactylifera
PDK_20s1520551g003
I
0.799
BRADI3G56290
Brachypodium distachyon
BRADI3G56290
I
0.793
PGSC0003DMG400001916
Solanum tuberosum
PGSC0003DMG400001916
I
0.789
Bra008670
Brassica rapa
Bra008670
I
0.789
Ciclev10032777m.g
Citrus clementina
Ciclev10032777m.g
I
0.789
Solyc04g005170.1
Solanum lycopersicum
Solyc04g005170.1
I
0.789
orange1.1g043159m.g
Citrus sinensis
orange1.1g043159m.g
I
0.789
Bo9g163740
Brassica oleracea
Bo9g163740
I
0.789
Bra023540
Brassica rapa
Bra023540
I
0.788
Thhalv10015835m.g
Eutrema salsugineum
Thhalv10015835m.g
I
0.788
Carubv10002068m.g
Capsella rubella
Carubv10002068m.g
I
0.788
Bostr.2902s0318
Boechera stricta
Bostr.2902s0318
I
0.788
Cagra.6845s0027
Capsella grandiflora
Cagra.6845s0027
I
0.788
Bo2g012800
Brassica oleracea
Bo2g012800
I
0.788
AtbZIP3
Arabidopsis lyrata
fgenesh2_kg.6__1562__AT5G15830.1
I
0.788
GSMUA_Achr5G05350_001
Musa acuminata
GSMUA_Achr5G05350_001
I
0.786
ATBZIP42
Arabidopsis thaliana
AT3G30530
D
0.782
Eucgr.I02090
Eucalyptus grandis
Eucgr.I02090
I
0.782
Cucsa.284240
Cucumis sativus
Cucsa.284240
I
0.782
Cla020641
Citrullus lanatus
Cla020641
I
0.782