CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Bb03716
(
Panicum virgatum
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Pavir.Bb03716
T072338_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TGA9
M01053_2.00
Arabidopsis thaliana
NNNMTGACGTHN
NDACGTCAKNNN
PBM
Sullivan et al.(2014)
pTH9788
0.790
0.878
TGA9
M06748_2.00
Arabidopsis thaliana
RTGACGTCAKC
GMTGACGTCAY
Dap-seq
OMalley et al.(2016)
TGA9_col_a
0.790
0.878
TGA9
M06749_2.00
Arabidopsis thaliana
TKACGTCAKCD
HGMTGACGTMA
Dap-seq
OMalley et al.(2016)
TGA9_colamp_a
0.790
0.878
PK09021.1
M01155_2.00
Cannabis sativa
NNTGACGTMA
TKACGTCANN
PBM
Lambert et al.(2019)
pTH10175
0.788
0.939
TGA6
M01780_2.00
Arabidopsis thaliana
NNTGACGTMA
TKACGTCANN
PBM
Weirauch et al.(2014)
pTH8691
0.788
0.918
TGA6
M01055_2.00
Arabidopsis thaliana
NNVTGACGTMN
NKACGTCABNN
PBM
Sullivan et al.(2014)
pTH8858
0.788
0.918
TGA2
M01784_2.00
Arabidopsis thaliana
NNACGTCABN
NVTGACGTNN
PBM
Weirauch et al.(2014)
pTH8820
0.788
0.918
TGA2
M00856_2.00
Arabidopsis thaliana
NVTGACGTMN
NKACGTCABN
PBM
Franco-Zorrilla et al.(2014)
TGA2
0.788
0.918
TGA5
M01785_2.00
Arabidopsis thaliana
VTGACGTN
NACGTCAB
PBM
Weirauch et al.(2014)
pTH8180
0.788
0.918
TGA2
M06785_2.00
Arabidopsis thaliana
YNMCGYCABCD
HGVTGRCGKNR
Dap-seq
OMalley et al.(2016)
TGA2_colamp_v31
0.788
0.918
TGA2
M06786_2.00
Arabidopsis thaliana
NNNNNDNHGMTGACGTCAYH
DRTGACGTCAKCDNHNNNNN
Dap-seq
OMalley et al.(2016)
TGA2_col
0.788
0.918
TGA5
M06787_2.00
Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA5_col_v3a
0.788
0.918
TGA6
M06773_2.00
Arabidopsis thaliana
DRTGACGTCAKCDNN
NNHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA6_col_a
0.788
0.918
TGA6
M06774_2.00
Arabidopsis thaliana
NRTGACGTCAKCDNN
NNHGMTGACGTCAYN
Dap-seq
OMalley et al.(2016)
TGA6_colamp_a
0.788
0.918
TGA2
M09917_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_01
0.788
0.918
TGA2
M09918_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_Q2
0.788
0.918
HBP1B_WHEAT
M10043_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBP1B_Q6
0.788
0.898
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Bb03716.1.p
bZIP
48
96
DQKTLRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQELQKARQQ
Links
Other
bZIP
family TFs
Other
Panicum virgatum
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART07G26940
Oryza barthii
OBART07G26940
I
0.802
OLONG_021555
Oryza longistaminata
OLONG_021555
I
0.802
ONIVA07G26680
Oryza nivara
ONIVA07G26680
I
0.802
OPUNC07G25310
Oryza punctata
OPUNC07G25310
I
0.802
OB07G32440
Oryza brachyantha
OB07G32440
I
0.802
LPERR07G23730
Leersia perrieri
LPERR07G23730
I
0.802
GLYMA20G24766
Glycine max
GLYMA20G24766
I
0.802
Pavir.Ba00294
Panicum virgatum
Pavir.Ba00294
I
0.802
GRMZM2G361847
Zea mays
GRMZM2G361847
I
0.802
ORGLA07G0213300
Oryza glaberrima
ORGLA07G0213300
I
0.802
BGIOSGA026428
Oryza indica
BGIOSGA026428
I
0.802
Cla008107
Citrullus lanatus
Cla008107
I
0.802
28883.m000741
Ricinus communis
28883.m000741
I
0.802
cassava35768.valid.m1
Manihot esculenta
cassava35768.valid.m1
I
0.802
GLYMA10G42280
Glycine max
GLYMA10G42280
I
0.802
Sb02g043480
Sorghum bicolor
Sb02g043480
I
0.802
ORUFI07G27880
Oryza rufipogon
ORUFI07G27880
I
0.802
TGA2.1
Oryza sativa
OS07G0687700
I
0.802
cassava43322.valid.m1
Manihot esculenta
cassava43322.valid.m1
I
0.802
Lus10004876.g
Linum usitatissimum
Lus10004876.g
I
0.797
Lus10020610.g
Linum usitatissimum
Lus10020610.g
I
0.797
SapurV1A.0009s1200
Salix purpurea
SapurV1A.0009s1200
I
0.792
MDP0000145555
Malus domestica
MDP0000145555
I
0.792
MDP0000250967
Malus domestica
MDP0000250967
I
0.792
MDP0000301884
Malus domestica
MDP0000301884
I
0.792
PGSC0003DMG400012962
Solanum tuberosum
PGSC0003DMG400012962
I
0.792
POPTR_0003s19410
Populus trichocarpa
POPTR_0003s19410
I
0.792
Pm029028
Prunus mume
Pm029028
I
0.792
gene14220-v1.0-hybrid
Fragaria vesca
gene14220-v1.0-hybrid
I
0.792
SapurV1A.0574s0080
Salix purpurea
SapurV1A.0574s0080
I
0.792
Solyc05g009660.2
Solanum lycopersicum
Solyc05g009660.2
I
0.792
PK08582.1
Cannabis sativa
PK08582.1
I
0.792
PRUPE_ppa019842mg
Prunus persica
PRUPE_ppa019842mg
I
0.792
Lus10009055.g
Linum usitatissimum
Lus10009055.g
N
0.791
PAN
Arabidopsis thaliana
AT1G68640
N
0.791
Thhalv10007490m.g
Eutrema salsugineum
Thhalv10007490m.g
I
0.790
Bra018634
Brassica rapa
Bra018634
I
0.790
Bo8g112540
Brassica oleracea
Bo8g112540
I
0.790
fgenesh1_pm.C_scaffold_1000665
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1000665
I
0.790
Bra031622
Brassica rapa
Bra031622
I
0.790
Bo5g008940
Brassica oleracea
Bo5g008940
I
0.790
Bostr.25219s0112
Boechera stricta
Bostr.25219s0112
I
0.790
TGA9
Arabidopsis thaliana
AT1G08320
D
0.790
Cucsa.365420
Cucumis sativus
Cucsa.365420
N
0.790
Cagra.4395s0022
Capsella grandiflora
Cagra.4395s0022
I
0.790
Solyc06g074320.2
Solanum lycopersicum
Solyc06g074320.2
I
0.790
Carubv10011576m.g
Capsella rubella
Carubv10011576m.g
I
0.790
Bo6g107140
Brassica oleracea
Bo6g107140
N
0.789
Bra004329
Brassica rapa
Bra004329
N
0.789
TCM_023492
Theobroma cacao
TCM_023492
I
0.788
Ca_16486
Cicer arietinum
Ca_16486
N
0.788
Ca_07170
Cicer arietinum
Ca_07170
I
0.788
Ca_10901
Cicer arietinum
Ca_10901
I
0.788
TGA6
Arabidopsis thaliana
AT3G12250
D
0.788
TCM_023491
Theobroma cacao
TCM_023491
I
0.788
Cla022393
Citrullus lanatus
Cla022393
I
0.788
Cla010092
Citrullus lanatus
Cla010092
I
0.788
Gorai.013G081100
Gossypium raimondii
Gorai.013G081100
I
0.788
Cla002918
Citrullus lanatus
Cla002918
I
0.788
Ca_17971
Cicer arietinum
Ca_17971
I
0.788
gene21882-v1.0-hybrid
Fragaria vesca
gene21882-v1.0-hybrid
I
0.788
Gorai.009G086200
Gossypium raimondii
Gorai.009G086200
N
0.788
Gorai.008G185000
Gossypium raimondii
Gorai.008G185000
I
0.788
SapurV1A.0189s0240
Salix purpurea
SapurV1A.0189s0240
I
0.788
Gorai.013G001700
Gossypium raimondii
Gorai.013G001700
I
0.788
Traes_2BS_8D66D6B82
Triticum aestivum
Traes_2BS_8D66D6B82
N
0.788
Gorai.011G217200
Gossypium raimondii
Gorai.011G217200
I
0.788
Gorai.007G352600
Gossypium raimondii
Gorai.007G352600
I
0.788
Pm016643
Prunus mume
Pm016643
I
0.788
VIT_08s0007g05170
Vitis vinifera
VIT_08s0007g05170
I
0.788
TRAES3BF003000030CFD_g
Triticum aestivum
TRAES3BF003000030CFD_g
I
0.788
PAN
Vitis vinifera
VIT_01s0011g03230
I
0.788
TRIUR3_19937
Triticum urartu
TRIUR3_19937
N
0.788
Bra034767
Brassica rapa
Bra034767
I
0.788
VIT_13s0084g00660
Vitis vinifera
VIT_13s0084g00660
I
0.788
evm.TU.supercontig_5.165
Carica papaya
evm.TU.supercontig_5.165
I
0.788
Bostr.13129s0278
Boechera stricta
Bostr.13129s0278
I
0.788
Bostr.13129s0279
Boechera stricta
Bostr.13129s0279
I
0.788
Aquca_009_00424
Aquilegia coerulea
Aquca_009_00424
I
0.788
Eucgr.G03217
Eucalyptus grandis
Eucgr.G03217
I
0.788
Eucgr.K01643
Eucalyptus grandis
Eucgr.K01643
I
0.788
Aquca_004_00791
Aquilegia coerulea
Aquca_004_00791
I
0.788
Bostr.3640s0002
Boechera stricta
Bostr.3640s0002
I
0.788
Cagra.0430s0055
Capsella grandiflora
Cagra.0430s0055
I
0.788
Ciclev10001081m.g
Citrus clementina
Ciclev10001081m.g
I
0.788
Eucgr.A02240
Eucalyptus grandis
Eucgr.A02240
I
0.788
Carubv10001413m.g
Capsella rubella
Carubv10001413m.g
I
0.788
Carubv10001409m.g
Capsella rubella
Carubv10001409m.g
I
0.788
Cagra.16209s0003
Capsella grandiflora
Cagra.16209s0003
I
0.788
Cagra.16209s0004
Capsella grandiflora
Cagra.16209s0004
I
0.788
mgf005858m
Mimulus guttatus
mgf005858m
I
0.788
Cucsa.337740
Cucumis sativus
Cucsa.337740
I
0.788
cassava1426.valid.m1
Manihot esculenta
cassava1426.valid.m1
I
0.788
cassava1427.valid.m1
Manihot esculenta
cassava1427.valid.m1
I
0.788
30131.m007163
Ricinus communis
30131.m007163
I
0.788
TCM_011845
Theobroma cacao
TCM_011845
I
0.788
Pm028917
Prunus mume
Pm028917
I
0.788
Bra028713
Brassica rapa
Bra028713
I
0.788
cassava22236.valid.m1
Manihot esculenta
cassava22236.valid.m1
I
0.788
cassava22237.valid.m1
Manihot esculenta
cassava22237.valid.m1
I
0.788
evm.TU.supercontig_1.202
Carica papaya
evm.TU.supercontig_1.202
I
0.788
Cucsa.307820
Cucumis sativus
Cucsa.307820
I
0.788
Cucsa.005120
Cucumis sativus
Cucsa.005120
I
0.788
cassava6928.valid.m1
Manihot esculenta
cassava6928.valid.m1
I
0.788
SapurV1A.0079s0330
Salix purpurea
SapurV1A.0079s0330
I
0.788
evm.TU.supercontig_847.1
Carica papaya
evm.TU.supercontig_847.1
I
0.788
Si002195m.g
Setaria italica
Si002195m.g
I
0.788
LPERR01G10700
Leersia perrieri
LPERR01G10700
I
0.788
MLOC_13431
Hordeum vulgare
MLOC_13431
N
0.788
MDP0000536881
Malus domestica
MDP0000536881
I
0.788
HBP1B_WHEAT
Triticum aestivum
HBP1B_WHEAT
D
0.788
orange1.1g015258m.g
Citrus sinensis
orange1.1g015258m.g
I
0.788
GSMUA_Achr3G25020_001
Musa acuminata
GSMUA_Achr3G25020_001
I
0.788
GSMUA_Achr8G05800_001
Musa acuminata
GSMUA_Achr8G05800_001
I
0.788
TGA6
Arabidopsis lyrata
fgenesh2_kg.3__1288__AT3G12250.4
I
0.788
MDP0000320524
Malus domestica
MDP0000320524
I
0.788
MDP0000300532
Malus domestica
MDP0000300532
I
0.788
Bo5g133550
Brassica oleracea
Bo5g133550
I
0.788
OBART01G11380
Oryza barthii
OBART01G11380
I
0.788
OB01G21470
Oryza brachyantha
OB01G21470
I
0.788
MTR_7g089800
Medicago truncatula
MTR_7g089800
I
0.788
MTR_8g040120
Medicago truncatula
MTR_8g040120
I
0.788
PK09021.1
Cannabis sativa
PK09021.1
D
0.788
GSMUA_Achr11G25140_001
Musa acuminata
GSMUA_Achr11G25140_001
I
0.788
GLYMA13G26280
Glycine max
GLYMA13G26280
I
0.788
GLYMA15G37220
Glycine max
GLYMA15G37220
I
0.788
Bra009241
Brassica rapa
Bra009241
I
0.788
GLYMA03G28320
Glycine max
GLYMA03G28320
I
0.788
GLYMA01G21120
Glycine max
GLYMA01G21120
I
0.788
GLYMA02G10833
Glycine max
GLYMA02G10833
I
0.788
GLYMA19G31050
Glycine max
GLYMA19G31050
I
0.788
GLYMA20G39050
Glycine max
GLYMA20G39050
I
0.788
Bo9g175710
Brassica oleracea
Bo9g175710
I
0.788
GSMUA_Achr10G00340_001
Musa acuminata
GSMUA_Achr10G00340_001
I
0.788
PK13754.1
Cannabis sativa
PK13754.1
I
0.788
orange1.1g045786m.g
Citrus sinensis
orange1.1g045786m.g
I
0.788
Bra001443
Brassica rapa
Bra001443
I
0.788
GRMZM2G030280
Zea mays
GRMZM2G030280
I
0.788
Solyc11g064950.1
Solanum lycopersicum
Solyc11g064950.1
I
0.788
MDP0000262210
Malus domestica
MDP0000262210
I
0.788
POPTR_0016s03590
Populus trichocarpa
POPTR_0016s03590
I
0.788
PRUPE_ppa005279mg
Prunus persica
PRUPE_ppa005279mg
I
0.788
PAN
Populus trichocarpa
POPTR_0008s11710
I
0.788
POPTR_0006s03720
Populus trichocarpa
POPTR_0006s03720
I
0.788
POPTR_0001s06700
Populus trichocarpa
POPTR_0001s06700
I
0.788
BRADI1G17210
Brachypodium distachyon
BRADI1G17210
N
0.788
Thhalv10021187m.g
Eutrema salsugineum
Thhalv10021187m.g
I
0.788
TGA5
Arabidopsis thaliana
AT5G06960
D
0.788
Thhalv10014082m.g
Eutrema salsugineum
Thhalv10014082m.g
I
0.788
Bra038705
Brassica rapa
Bra038705
I
0.788
OBF5
Arabidopsis lyrata
fgenesh2_kg.6__648__AT5G06960.1
I
0.788
TGA2
Arabidopsis thaliana
AT5G06950
D
0.788
Sb03g006790
Sorghum bicolor
Sb03g006790
I
0.788
Lus10008658.g
Linum usitatissimum
Lus10008658.g
I
0.788
chr1.CM0009.80.nd
Lotus japonicus
chr1.CM0009.80.nd
I
0.788
PGSC0003DMG400009449
Solanum tuberosum
PGSC0003DMG400009449
I
0.788
OPUNC01G11270
Oryza punctata
OPUNC01G11270
I
0.788
Lus10026166.g
Linum usitatissimum
Lus10026166.g
I
0.788
Bo2g007460
Brassica oleracea
Bo2g007460
I
0.788
Bo3g064830
Brassica oleracea
Bo3g064830
I
0.788
SapurV1A.0196s0260
Salix purpurea
SapurV1A.0196s0260
I
0.788
Pavir.Eb01160
Panicum virgatum
Pavir.Eb01160
I
0.788
ONIVA01G13810
Oryza nivara
ONIVA01G13810
I
0.788
Lus10024140.g
Linum usitatissimum
Lus10024140.g
I
0.788
Bo1g139470
Brassica oleracea
Bo1g139470
I
0.788
TGA2.3
Oryza sativa
OS01G0279900
I
0.788
Ciclev10005080m.g
Citrus clementina
Ciclev10005080m.g
I
0.788
F775_31721
Aegilops tauschii
F775_31721
N
0.788
BRADI2G10830
Brachypodium distachyon
BRADI2G10830
I
0.788
ORUFI01G12420
Oryza rufipogon
ORUFI01G12420
I
0.788
BGIOSGA003265
Oryza indica
BGIOSGA003265
I
0.788
orange1.1g036441m.g
Citrus sinensis
orange1.1g036441m.g
N
0.787
Traes_1AS_412B31FC1
Triticum aestivum
Traes_1AS_412B31FC1
N
0.787
Traes_1BS_E3FCA98E3
Triticum aestivum
Traes_1BS_E3FCA98E3
N
0.787
Ciclev10004036m.g
Citrus clementina
Ciclev10004036m.g
N
0.787
PRUPE_ppa003825mg
Prunus persica
PRUPE_ppa003825mg
I
0.786
Ciclev10031361m.g
Citrus clementina
Ciclev10031361m.g
I
0.786
orange1.1g038233m.g
Citrus sinensis
orange1.1g038233m.g
I
0.786
TCM_024862
Theobroma cacao
TCM_024862
I
0.786
MDP0000320322
Malus domestica
MDP0000320322
I
0.786
OS02G0194900
Oryza sativa
OS02G0194900
I
0.786
MDP0000307943
Malus domestica
MDP0000307943
I
0.786
ORGLA02G0067600
Oryza glaberrima
ORGLA02G0067600
I
0.786
OLONG_010393
Oryza longistaminata
OLONG_010393
I
0.786
OGLUM02G07240
Oryza glumaepatula
OGLUM02G07240
I
0.786
OMERI02G08300
Oryza meridionalis
OMERI02G08300
I
0.786
ONIVA02G08860
Oryza nivara
ONIVA02G08860
I
0.786
OPUNC02G06400
Oryza punctata
OPUNC02G06400
I
0.786
PK21698.1
Cannabis sativa
PK21698.1
I
0.786
Pavir.J27823
Panicum virgatum
Pavir.J27823
I
0.786
SapurV1A.1761s0020
Salix purpurea
SapurV1A.1761s0020
I
0.786
29216.m000249
Ricinus communis
29216.m000249
I
0.786
Pm025995
Prunus mume
Pm025995
I
0.786
evm.TU.supercontig_85.93
Carica papaya
evm.TU.supercontig_85.93
I
0.786
Cucsa.242870
Cucumis sativus
Cucsa.242870
I
0.786
mgf025345m
Mimulus guttatus
mgf025345m
I
0.786
Eucgr.A02436
Eucalyptus grandis
Eucgr.A02436
I
0.786
Aquca_009_00172
Aquilegia coerulea
Aquca_009_00172
I
0.786
gene00517-v1.0-hybrid
Fragaria vesca
gene00517-v1.0-hybrid
I
0.786
Cla017796
Citrullus lanatus
Cla017796
I
0.786
Gorai.006G141000
Gossypium raimondii
Gorai.006G141000
I
0.786
OBART02G07230
Oryza barthii
OBART02G07230
I
0.786
BGIOSGA007726
Oryza indica
BGIOSGA007726
I
0.786
Gorai.002G228200
Gossypium raimondii
Gorai.002G228200
I
0.786
TGA10
Vitis vinifera
VIT_08s0007g06160
I
0.786
Gorai.001G122100
Gossypium raimondii
Gorai.001G122100
I
0.786
GRMZM2G125243
Zea mays
GRMZM2G125243
I
0.785
Pavir.J04905
Panicum virgatum
Pavir.J04905
I
0.785
AMTR_s00095p00059370
Amborella trichopoda
AMTR_s00095p00059370
I
0.785
GSMUA_Achr9G27700_001
Musa acuminata
GSMUA_Achr9G27700_001
I
0.785
Pavir.Eb03507
Panicum virgatum
Pavir.Eb03507
I
0.785
GRMZM2G019907
Zea mays
GRMZM2G019907
I
0.785
Lus10018009.g
Linum usitatissimum
Lus10018009.g
N
0.785
Sb03g037560
Sorghum bicolor
Sb03g037560
I
0.785
Si001292m.g
Setaria italica
Si001292m.g
I
0.785
AMTR_s00010p00030830
Amborella trichopoda
AMTR_s00010p00030830
I
0.785
Lus10042005.g
Linum usitatissimum
Lus10042005.g
N
0.785
OB01G43330
Oryza brachyantha
OB01G43330
I
0.785
Traes_4DS_0521C8ABF
Triticum aestivum
Traes_4DS_0521C8ABF
N
0.784
Traes_4BS_B7A8F8CD8
Triticum aestivum
Traes_4BS_B7A8F8CD8
N
0.784
F775_05299
Aegilops tauschii
F775_05299
N
0.784
MTR_5g054900
Medicago truncatula
MTR_5g054900
I
0.784
MLOC_17690
Hordeum vulgare
MLOC_17690
N
0.784
Traes_4AL_5E7F93445
Triticum aestivum
Traes_4AL_5E7F93445
N
0.784
Traes_4BL_DAFEC95DD
Triticum aestivum
Traes_4BL_DAFEC95DD
N
0.783
GSMUA_Achr3G11150_001
Musa acuminata
GSMUA_Achr3G11150_001
I
0.783
GRMZM2G174284
Zea mays
GRMZM2G174284
N
0.783
GRMZM2G056099
Zea mays
GRMZM2G056099
N
0.783
BRADI1G64060
Brachypodium distachyon
BRADI1G64060
N
0.783
MLOC_64008
Hordeum vulgare
MLOC_64008
N
0.783
Sb01g037050
Sorghum bicolor
Sb01g037050
N
0.783
Gorai.005G092400
Gossypium raimondii
Gorai.005G092400
N
0.783
Traes_4DL_73DC40D7B
Triticum aestivum
Traes_4DL_73DC40D7B
N
0.783
Traes_4AS_6EDD5ACF7
Triticum aestivum
Traes_4AS_6EDD5ACF7
N
0.783
Si036527m.g
Setaria italica
Si036527m.g
N
0.783
Lus10043387.g
Linum usitatissimum
Lus10043387.g
N
0.783