Pavir.Ca00968 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ca00968 T072346_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q40645_ORYSA
M10050_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OSBZ8_Q6
0.865 0.812
Q41109_PHAVU
M10078_2.00
Phaseolus vulgaris Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ROM_Q2
0.864 0.812
PK09653.1
M01156_2.00
Cannabis sativa
NNMCASVNNN

NNNBSTGKNN
PBM
Lambert et al.(2019)
pTH10114
0.854 0.750
GBF2
M01781_2.00
Arabidopsis thaliana
BMCASSNNN

NNNSSTGKV
PBM
Weirauch et al.(2014)
pTH7258
0.848 0.703
GBF3
M01779_2.00
Arabidopsis thaliana
NBMCASSTVD

HBASSTGKVN
PBM
Weirauch et al.(2014)
pTH7328
0.836 0.734
GBF3
M06770_2.00
Arabidopsis thaliana
DNHDNHSACGTGKMD

HKMCACGTSDNHDNH
Dap-seq
OMalley et al.(2016)
GBF3_colamp
0.836 0.734
GBF3
M06771_2.00
Arabidopsis thaliana
DDWKVYSACGTGGCA

TGCCACGTSRBMWHH
Dap-seq
OMalley et al.(2016)
GBF3_col
0.836 0.734
TAF1_TOBAC
M10079_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_01
0.821 0.766
TAF1_TOBAC
M10080_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_Q2
0.821 0.766
GBF1
M01783_2.00
Arabidopsis thaliana
HBACGTGKMN

NKMCACGTVD
PBM
Weirauch et al.(2014)
pTH7259
0.811 0.656
GBF1
M09913_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_01
0.811 0.656
GBF1
M09914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1F_Q2
0.811 0.656
GBF1
M09915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2_01
0.811 0.656
GBF1
M09916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2
0.811 0.656
BZIP68
M01770_2.00
Arabidopsis thaliana
BMCASGBND

HNVCSTGKV
PBM
Weirauch et al.(2014)
pTH8192
0.789 0.641
BZIP68
M06752_2.00
Arabidopsis thaliana
DNWKNHSACGTGGCR

YGCCACGTSDNMWNH
Dap-seq
OMalley et al.(2016)
bZIP68_col_a
0.789 0.641
CPRF1_PETCR
M10066_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_01
0.786 0.688
CPRF1_PETCR
M10067_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_Q2
0.786 0.688
CPRF1_PETCR
M10068_2.00
Petroselinum crispum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF_Q2
0.786 0.688
BZIP16
M06764_2.00
Arabidopsis thaliana
DDWKVYSACGTGGCA

TGCCACGTSRBMWHH
Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a
0.783 0.625
BZIP16
M06765_2.00
Arabidopsis thaliana
DDWKVHSACGTGGCA

TGCCACGTSDBMWHH
Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a
0.783 0.625
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00968.1.p bZIP 457 520
Pavir.Ca00968.2.p bZIP 454 517

Links

Other bZIP family TFs
Other Panicum virgatum TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GBF1 Arabidopsis thaliana AT4G36730 D 0.811
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.821
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.865
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.864
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D 0.786
GBF2 Arabidopsis thaliana AT4G01120 D 0.848
GBF3 Arabidopsis thaliana AT2G46270 D 0.836
BZIP16 Arabidopsis thaliana AT2G35530 D 0.783
BZIP68 Arabidopsis thaliana AT1G32150 D 0.789
PK09653.1 Cannabis sativa PK09653.1 D 0.854
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.788
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.788
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.800
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.782
Cucsa.322110 Cucumis sativus Cucsa.322110 I 0.786
Cucsa.312800 Cucumis sativus Cucsa.312800 I 0.785
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.830
Cucsa.104970 Cucumis sativus Cucsa.104970 I 0.785
mgf003302m Mimulus guttatus mgf003302m I 0.840
mgf013423m Mimulus guttatus mgf013423m I 0.840
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.826
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.836
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.811
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.835
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.811
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I 0.789
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.835
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I 0.783
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.836
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.811
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.835
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I 0.783
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.810
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.839
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.808
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.839
Cla008988 Citrullus lanatus Cla008988 I 0.786
Ca_17787 Cicer arietinum Ca_17787 I 0.812
Ca_15839 Cicer arietinum Ca_15839 I 0.789
Ca_11455 Cicer arietinum Ca_11455 I 0.786
Ca_01293 Cicer arietinum Ca_01293 I 0.830
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.811
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.788
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.805
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.866
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I 0.786
Cla014415 Citrullus lanatus Cla014415 I 0.785
Cla016502 Citrullus lanatus Cla016502 I 0.785
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.839
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.839
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.847
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.847
30174.m008698 Ricinus communis 30174.m008698 I 0.853
29646.m001068 Ricinus communis 29646.m001068 I 0.808
Pm026586 Prunus mume Pm026586 I 0.788
Pm024103 Prunus mume Pm024103 I 0.794
Pm018422 Prunus mume Pm018422 I 0.826
Cla021500 Citrullus lanatus Cla021500 I 0.830
TRIUR3_31142 Triticum urartu TRIUR3_31142 I 0.786
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I 0.789
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I 0.786
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.818
Pavir.J01411 Panicum virgatum Pavir.J01411 I 0.844
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.865
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I 0.795
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I 0.795
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I 0.785
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.788
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.827
MDP0000545420 Malus domestica MDP0000545420 I 0.826
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.791
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I 0.791
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I 0.786
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.833
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I 0.785
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I 0.786
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.804
PK07494.1 Cannabis sativa PK07494.1 I 0.787
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.838
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.823
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.798
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I 0.789
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.836
MDP0000493795 Malus domestica MDP0000493795 I 0.826
MDP0000239688 Malus domestica MDP0000239688 I 0.798
MDP0000231274 Malus domestica MDP0000231274 I 0.800
gene32024-v1.0-hybrid Fragaria vesca gene32024-v1.0-hybrid I 0.793
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.793
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.796
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.841
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.802
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I 0.806
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I 0.786
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.840
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.784
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.788
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.827
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I 0.786
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.854
MDP0000138052 Malus domestica MDP0000138052 I 0.826
Lus10026033.g Linum usitatissimum Lus10026033.g I 0.790
Lus10014324.g Linum usitatissimum Lus10014324.g I 0.790
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.837
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.837
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.789
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.854
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I 0.783
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I 0.783
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.854
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I 0.784
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I 0.785
OBART07G07070 Oryza barthii OBART07G07070 I 0.795
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.838
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.833
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.811
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.851
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.851
GRMZM2G171370 Zea mays GRMZM2G171370 I 0.795
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.851
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.865
GRMZM2G095078 Zea mays GRMZM2G095078 I 0.795
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.851
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.837
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.865
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.865
OBART05G26280 Oryza barthii OBART05G26280 I 0.865
OBART01G25300 Oryza barthii OBART01G25300 I 0.865
OB07G15280 Oryza brachyantha OB07G15280 I 0.795
OB05G33790 Oryza brachyantha OB05G33790 I 0.865
OB01G34490 Oryza brachyantha OB01G34490 I 0.865
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.822
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.830
MTR_5g028850 Medicago truncatula MTR_5g028850 I 0.786
MLOC_79342 Hordeum vulgare MLOC_79342 I 0.783
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.866
LPERR07G06120 Leersia perrieri LPERR07G06120 I 0.795
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.819
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.864
GLYMA09G34170 Glycine max GLYMA09G34170 I 0.786
Bra004550 Brassica rapa Bra004550 I 0.836
Bo9g003700 Brassica oleracea Bo9g003700 I 0.838
Bo4g038560 Brassica oleracea Bo4g038560 I 0.794
Bo4g010410 Brassica oleracea Bo4g010410 I 0.836
Bo3g039150 Brassica oleracea Bo3g039150 I 0.808
Bo1g005460 Brassica oleracea Bo1g005460 I 0.814
BGIOSGA025382 Oryza indica BGIOSGA025382 I 0.795
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.848
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.865
AMTR_s00158p00056990 Amborella trichopoda AMTR_s00158p00056990 I 0.790
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I 0.783
Bra005335 Brassica rapa Bra005335 I 0.783
Bra010572 Brassica rapa Bra010572 I 0.823
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.807
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.864
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.837
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I 0.789
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.836
F775_07803 Aegilops tauschii F775_07803 I 0.866
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.864
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.859
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I 0.786
Bra037382 Brassica rapa Bra037382 I 0.838
Bra011701 Brassica rapa Bra011701 I 0.814
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.836
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I 0.786
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.813
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.811
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.868
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.864
Sb02g006350 Sorghum bicolor Sb02g006350 I 0.795
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.794
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.788
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.826
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.817
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.795
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.795
Si001929m.g Setaria italica Si001929m.g I 0.865
Si022388m.g Setaria italica Si022388m.g I 0.868
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.866
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.866
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.866
TCM_005210 Theobroma cacao TCM_005210 I 0.854
TCM_000436 Theobroma cacao TCM_000436 I 0.783
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.821
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.800
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.784
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.812
Si039367m.g Setaria italica Si039367m.g I 0.785
Si030123m.g Setaria italica Si030123m.g I 0.795
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.835
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.821
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.800
ONIVA07G05320 Oryza nivara ONIVA07G05320 I 0.795
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.848
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.865
OMERI07G05820 Oryza meridionalis OMERI07G05820 I 0.795
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.865
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.865
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.865
OLONG_021599 Oryza longistaminata OLONG_021599 I 0.795
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.865
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I 0.795
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.865
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.865
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.793
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.812
OS07G0209800 Oryza sativa OS07G0209800 I 0.795
OS05G0569300 Oryza sativa OS05G0569300 I 0.865
OS01G0658900 Oryza sativa OS01G0658900 I 0.865
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I 0.795
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.865
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.865
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.865
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.865
OPUNC07G06790 Oryza punctata OPUNC07G06790 I 0.795
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.848
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.865