Pavir.Ib01001 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ib01001 T072425_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN

NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.805 0.792
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM

KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.805 0.792
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN

NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.805 0.792
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH

DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.805 0.792
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH

DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.805 0.792
PK24978.1
M01162_2.00
Cannabis sativa
NNNCACGTRTHNNNN

NNNNDAYACGTGNNN
PBM
Lambert et al.(2019)
pTH10153
0.794 0.714
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01001.1.p bZIP 161 209
Pavir.Ib01001.2.p bZIP 161 209
Pavir.Ib01001.3.p bZIP 161 208

Links

Other bZIP family TFs
Other Panicum virgatum TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb01g036810 Sorghum bicolor Sb01g036810 I 0.824
MLOC_16096 Hordeum vulgare MLOC_16096 I 0.811
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I 0.811
F775_17024 Aegilops tauschii F775_17024 I 0.811
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I 0.811
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I 0.807
F775_28711 Aegilops tauschii F775_28711 I 0.807
TRIUR3_24203 Triticum urartu TRIUR3_24203 I 0.807
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I 0.807
MLOC_4554 Hordeum vulgare MLOC_4554 I 0.807
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I 0.807
Si002173m.g Setaria italica Si002173m.g I 0.807
ONIVA01G39770 Oryza nivara ONIVA01G39770 I 0.807
ORUFI01G38120 Oryza rufipogon ORUFI01G38120 I 0.807
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I 0.807
OS01G0813100 Oryza sativa OS01G0813100 I 0.807
OMERI01G32080 Oryza meridionalis OMERI01G32080 I 0.807
OBART01G34790 Oryza barthii OBART01G34790 I 0.807
OGLUM01G38810 Oryza glumaepatula OGLUM01G38810 I 0.807
OLONG_002030 Oryza longistaminata OLONG_002030 I 0.807
OB01G43630 Oryza brachyantha OB01G43630 I 0.807
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I 0.807
Pavir.Eb03523 Panicum virgatum Pavir.Eb03523 I 0.807
Pavir.J38875 Panicum virgatum Pavir.J38875 I 0.807
BGIOSGA000613 Oryza indica BGIOSGA000613 I 0.807
AREB3 Arabidopsis lyrata scaffold_502836.1 I 0.805
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I 0.805
Sb02g043620 Sorghum bicolor Sb02g043620 I 0.805
Pavir.J05672 Panicum virgatum Pavir.J05672 I 0.805
Pavir.J34085 Panicum virgatum Pavir.J34085 I 0.805
Pavir.Bb03699 Panicum virgatum Pavir.Bb03699 I 0.805
Si022639m.g Setaria italica Si022639m.g I 0.805
Traes_1AL_1FFBFB058 Triticum aestivum Traes_1AL_1FFBFB058 I 0.805
Traes_1BL_DE2CF9613 Triticum aestivum Traes_1BL_DE2CF9613 I 0.805
Pavir.Ba00263 Panicum virgatum Pavir.Ba00263 I 0.805
TCM_044596 Theobroma cacao TCM_044596 I 0.805
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I 0.805
PRUPE_ppa008716mg Prunus persica PRUPE_ppa008716mg I 0.805
POPTR_0010s25460 Populus trichocarpa POPTR_0010s25460 I 0.805
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I 0.805
OS03G0322700 Oryza sativa OS03G0322700 I 0.805
SapurV1A.0036s0950 Salix purpurea SapurV1A.0036s0950 I 0.805
ORUFI07G27740 Oryza rufipogon ORUFI07G27740 I 0.805
ORUFI05G22290 Oryza rufipogon ORUFI05G22290 I 0.805
OS05G0489700 Oryza sativa OS05G0489700 I 0.805
OS07G0686100 Oryza sativa OS07G0686100 I 0.805
Traes_1DL_D9BA83221 Triticum aestivum Traes_1DL_D9BA83221 I 0.805
POPTR_0010s25440 Populus trichocarpa POPTR_0010s25440 I 0.805
POPTR_0008s01130 Populus trichocarpa POPTR_0008s01130 I 0.805
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I 0.805
ORGLA03G0149400 Oryza glaberrima ORGLA03G0149400 I 0.805
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I 0.805
Traes_3AL_58F294736 Triticum aestivum Traes_3AL_58F294736 I 0.805
mgf011003m Mimulus guttatus mgf011003m I 0.805
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I 0.805
mgf002556m Mimulus guttatus mgf002556m I 0.805
Cucsa.364380 Cucumis sativus Cucsa.364380 I 0.805
30226.m002055 Ricinus communis 30226.m002055 I 0.805
cassava22423.valid.m1 Manihot esculenta cassava22423.valid.m1 I 0.805
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I 0.805
Carubv10018770m.g Capsella rubella Carubv10018770m.g I 0.805
Gorai.009G301200 Gossypium raimondii Gorai.009G301200 I 0.805
gene00393-v1.0-hybrid Fragaria vesca gene00393-v1.0-hybrid I 0.805
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I 0.805
Ciclev10012205m.g Citrus clementina Ciclev10012205m.g I 0.805
Ciclev10001893m.g Citrus clementina Ciclev10001893m.g I 0.805
Pm016826 Prunus mume Pm016826 I 0.805
Cla013878 Citrullus lanatus Cla013878 I 0.805
MDP0000215106 Malus domestica MDP0000215106 I 0.805
Lus10028889.g Linum usitatissimum Lus10028889.g I 0.805
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I 0.805
MDP0000273211 Malus domestica MDP0000273211 I 0.805
orange1.1g021146m.g Citrus sinensis orange1.1g021146m.g I 0.805
orange1.1g020697m.g Citrus sinensis orange1.1g020697m.g I 0.805
Lus10008927.g Linum usitatissimum Lus10008927.g I 0.805
TRIUR3_06726 Triticum urartu TRIUR3_06726 I 0.805
VIT_13s0175g00120 Vitis vinifera VIT_13s0175g00120 I 0.805
Ca_08143 Cicer arietinum Ca_08143 I 0.805
OPUNC07G25180 Oryza punctata OPUNC07G25180 I 0.805
Gorai.009G301400 Gossypium raimondii Gorai.009G301400 I 0.805
TRIUR3_12792 Triticum urartu TRIUR3_12792 I 0.805
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I 0.805
Sb09g023920 Sorghum bicolor Sb09g023920 I 0.805
OBART05G21000 Oryza barthii OBART05G21000 I 0.805
GLYMA08G24340 Glycine max GLYMA08G24340 I 0.805
GSMUA_Achr8G21560_001 Musa acuminata GSMUA_Achr8G21560_001 I 0.805
GLYMA15G35080 Glycine max GLYMA15G35080 I 0.805
OBART07G26790 Oryza barthii OBART07G26790 I 0.805
OGLUM03G15730 Oryza glumaepatula OGLUM03G15730 I 0.805
BGIOSGA026419 Oryza indica BGIOSGA026419 I 0.805
GLYMA19G30230 Glycine max GLYMA19G30230 I 0.805
LPERR01G30010 Leersia perrieri LPERR01G30010 I 0.805
LPERR05G16840 Leersia perrieri LPERR05G16840 I 0.805
BRADI4G43850 Brachypodium distachyon BRADI4G43850 I 0.805
OB05G28440 Oryza brachyantha OB05G28440 I 0.805
MTR_7g088090 Medicago truncatula MTR_7g088090 I 0.805
OB07G32300 Oryza brachyantha OB07G32300 I 0.805
MLOC_6534 Hordeum vulgare MLOC_6534 I 0.805
GLYMA03G00580 Glycine max GLYMA03G00580 I 0.805
F775_31964 Aegilops tauschii F775_31964 I 0.805
OGLUM07G26780 Oryza glumaepatula OGLUM07G26780 I 0.805
OGLUM05G22240 Oryza glumaepatula OGLUM05G22240 I 0.805
DPBF3 Arabidopsis thaliana AT3G56850 D 0.805
ONIVA03G16560 Oryza nivara ONIVA03G16560 I 0.805
OMERI07G23410 Oryza meridionalis OMERI07G23410 I 0.805
GRMZM2G161009 Zea mays GRMZM2G161009 I 0.805
ONIVA05G21710 Oryza nivara ONIVA05G21710 I 0.805
OPUNC01G33790 Oryza punctata OPUNC01G33790 I 0.805
ONIVA07G26520 Oryza nivara ONIVA07G26520 I 0.805
OMERI03G14020 Oryza meridionalis OMERI03G14020 I 0.805
OMERI05G18990 Oryza meridionalis OMERI05G18990 I 0.805
OLONG_003399 Oryza longistaminata OLONG_003399 I 0.805
AMTR_s00101p00038080 Amborella trichopoda AMTR_s00101p00038080 I 0.805
GRMZM2G077124 Zea mays GRMZM2G077124 I 0.805
BGIOSGA010835 Oryza indica BGIOSGA010835 I 0.805
BGIOSGA020087 Oryza indica BGIOSGA020087 I 0.805
ATBZIP27 Arabidopsis thaliana AT2G17770 I 0.801
FD Arabidopsis lyrata Al_scaffold_0007_453 I 0.801
FD Arabidopsis thaliana AT4G35900 I 0.801
MDP0000740787 Malus domestica MDP0000740787 I 0.798
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I 0.797
Sb03g037740 Sorghum bicolor Sb03g037740 I 0.795
evm.TU.supercontig_33.182 Carica papaya evm.TU.supercontig_33.182 I 0.794
Bra007274 Brassica rapa Bra007274 I 0.794
Bo6g072380 Brassica oleracea Bo6g072380 I 0.794
Bo8g091160 Brassica oleracea Bo8g091160 I 0.794
Bo4g112690 Brassica oleracea Bo4g112690 I 0.794
Bra003253 Brassica rapa Bra003253 I 0.794
Bra007276 Brassica rapa Bra007276 I 0.794
PK24978.1 Cannabis sativa PK24978.1 D 0.794
BRADI2G21820 Brachypodium distachyon BRADI2G21820 I 0.794
Bra014668 Brassica rapa Bra014668 I 0.794
Aquca_009_00009 Aquilegia coerulea Aquca_009_00009 I 0.793
Bo4g012940 Brassica oleracea Bo4g012940 I 0.793
PGSC0003DMG400007208 Solanum tuberosum PGSC0003DMG400007208 I 0.793
EEL Arabidopsis thaliana AT2G41070 I 0.793
LjSGA_023611.1 Lotus japonicus LjSGA_023611.1 I 0.793
GLYMA06G47220 Glycine max GLYMA06G47220 I 0.793
Bostr.9345s0024 Boechera stricta Bostr.9345s0024 I 0.793
Carubv10023893m.g Capsella rubella Carubv10023893m.g I 0.793
Ca_15706 Cicer arietinum Ca_15706 I 0.793
Thhalv10017050m.g Eutrema salsugineum Thhalv10017050m.g I 0.793
EEL Arabidopsis lyrata fgenesh2_kg.4__2235__AT2G41070.2 I 0.793
Cagra.1642s0072 Capsella grandiflora Cagra.1642s0072 I 0.793
GLYMA04G14840 Glycine max GLYMA04G14840 I 0.793
GRMZM2G159134 Zea mays GRMZM2G159134 I 0.793
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I 0.793
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.791
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.791
F775_32479 Aegilops tauschii F775_32479 I 0.791
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.791
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.791
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.791
Si001731m.g Setaria italica Si001731m.g I 0.791
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I 0.791
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I 0.791
SELMODRAFT_451399 Selaginella moellendorffii SELMODRAFT_451399 I 0.791
OBART01G37980 Oryza barthii OBART01G37980 I 0.791
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.791
OB01G46760 Oryza brachyantha OB01G46760 I 0.791
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.791
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.791
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.791
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.791
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.791
TRIUR3_21253 Triticum urartu TRIUR3_21253 I 0.791
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.791
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.791
OS01G0859300 Oryza sativa OS01G0859300 I 0.791
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.791
OPUNC05G18710 Oryza punctata OPUNC05G18710 I 0.791
SELMODRAFT_227594 Selaginella moellendorffii SELMODRAFT_227594 I 0.791
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.791
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.791
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.791
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.791
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.791
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.791
BRADI1G17335 Brachypodium distachyon BRADI1G17335 I 0.789
MLOC_61490 Hordeum vulgare MLOC_61490 I 0.789
Traes_4AS_F9C171219 Triticum aestivum Traes_4AS_F9C171219 I 0.789
TRIUR3_15490 Triticum urartu TRIUR3_15490 I 0.789
Traes_4BL_4C9A415F3 Triticum aestivum Traes_4BL_4C9A415F3 I 0.789
Traes_4DL_F38ED7FB6 Triticum aestivum Traes_4DL_F38ED7FB6 I 0.789
29955.m001177 Ricinus communis 29955.m001177 I 0.788
TCM_000152 Theobroma cacao TCM_000152 I 0.787
Gorai.007G191800 Gossypium raimondii Gorai.007G191800 I 0.787
Cla009066 Citrullus lanatus Cla009066 I 0.787
gene14556-v1.0-hybrid Fragaria vesca gene14556-v1.0-hybrid I 0.787
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.786
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.786
orange1.1g037676m.g Citrus sinensis orange1.1g037676m.g I 0.786
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I 0.786
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I 0.786
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.786
30055.m001548 Ricinus communis 30055.m001548 I 0.786
Pm004043 Prunus mume Pm004043 I 0.786
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I 0.786
Pm001315 Prunus mume Pm001315 I 0.786
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.786
MDP0000706379 Malus domestica MDP0000706379 I 0.786
Cla000389 Citrullus lanatus Cla000389 I 0.786
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I 0.786
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I 0.786
Ciclev10028635m.g Citrus clementina Ciclev10028635m.g I 0.786
GLYMA05G25200 Glycine max GLYMA05G25200 I 0.786
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I 0.785
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I 0.785
Cucsa.184670 Cucumis sativus Cucsa.184670 I 0.785
TCM_006432 Theobroma cacao TCM_006432 I 0.785
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I 0.785
MDP0000198495 Malus domestica MDP0000198495 I 0.785
F775_43558 Aegilops tauschii F775_43558 I 0.785
chr2.CM0695.170.nc Lotus japonicus chr2.CM0695.170.nc I 0.784
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.784
Ca_23748 Cicer arietinum Ca_23748 I 0.782
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I 0.782
SELMODRAFT_428822 Selaginella moellendorffii SELMODRAFT_428822 I 0.782
MTR_3g010660 Medicago truncatula MTR_3g010660 I 0.782
Gorai.009G192500 Gossypium raimondii Gorai.009G192500 N 0.782
Bra016953 Brassica rapa Bra016953 I 0.782