CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib01001
(
Panicum virgatum
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Pavir.Ib01001
T072425_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DPBF3
M01133_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Lambert et al.(2019)
pTH11531
0.805
0.792
DPBF3
M01058_2.00
Arabidopsis thaliana
HBACGTGKM
KMCACGTVD
PBM
Sullivan et al.(2014)
pTH7219
0.805
0.776
DPBF3
M01059_2.00
Arabidopsis thaliana
NNMCACGTVN
NBACGTGKNN
PBM
Sullivan et al.(2014)
pTH7547
0.805
0.776
DPBF3
M06777_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_colamp_a
0.805
0.792
DPBF3
M06778_2.00
Arabidopsis thaliana
TGMCACGTSWYMHHH
DDDKRWSACGTGKCA
Dap-seq
OMalley et al.(2016)
AREB3_col_v31
0.805
0.792
PK24978.1
M01162_2.00
Cannabis sativa
NNNCACGTRTHNNNN
NNNNDAYACGTGNNN
PBM
Lambert et al.(2019)
pTH10153
0.794
0.729
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib01001.1.p
bZIP
161
209
RSNERRKKRMIKNRESAARSRARKQAYTKDLEIKISQLEEENERLRGHK
Pavir.Ib01001.2.p
bZIP
161
209
RSNERRKKRMIKNRESAARSRARKQAYTKDLEIKISQLEEENERLRGHK
Pavir.Ib01001.3.p
bZIP
161
208
RSNERRKKRMIKNRESAARSRARKQAYTKDLEIKISQLEEENERLRGH
Links
Other
bZIP
family TFs
Other
Panicum virgatum
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy