CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OLONG_001081
(
Oryza longistaminata
)
bZIP,MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
PF00319 (SRF-TF)
IPR011616
IPR002100
OLONG_001081
T075606_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS22
M10087_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS22_01
0.949
0.949
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_001081-R1
MADS box
14
56
PSDTVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF
OLONG_001081-R1
bZIP
144
179
FMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQV
Links
Other
bZIP,MADS box
family TFs
Other
Oryza longistaminata
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OPUNC02G30720
Oryza punctata
OPUNC02G30720
I
0.949
ORUFI02G34940
Oryza rufipogon
ORUFI02G34940
I
0.949
MADS22
Oryza sativa
OS02G0761000
D
0.949
BGIOSGA009093
Oryza indica
BGIOSGA009093
I
0.949
ONIVA02G35910
Oryza nivara
ONIVA02G35910
I
0.949
OBART02G33400
Oryza barthii
OBART02G33400
I
0.949
OGLUM02G33890
Oryza glumaepatula
OGLUM02G33890
I
0.949
OMERI02G31880
Oryza meridionalis
OMERI02G31880
I
0.949
Pavir.Aa00556
Panicum virgatum
Pavir.Aa00556
I
0.873