Pavir.Aa00556 (Panicum virgatum)
bZIP,MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1)
PF00319 (SRF-TF) 		IPR011616
IPR002100 		Pavir.Aa00556 T075613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS22
M10087_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS22_01 		0.918 0.918
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00556.1.p MADS box 10 57
Pavir.Aa00556.1.p bZIP 143 179

Links

Other bZIP,MADS box family TFs
Other Panicum virgatum TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC02G30720 Oryza punctata OPUNC02G30720 I 0.929
ORUFI02G34940 Oryza rufipogon ORUFI02G34940 I 0.929
MADS22 Oryza sativa OS02G0761000 D 0.929
ONIVA02G35910 Oryza nivara ONIVA02G35910 I 0.929
OMERI02G31880 Oryza meridionalis OMERI02G31880 I 0.929
OGLUM02G33890 Oryza glumaepatula OGLUM02G33890 I 0.929
BGIOSGA009093 Oryza indica BGIOSGA009093 I 0.929
OBART02G33400 Oryza barthii OBART02G33400 I 0.929
OLONG_001081 Oryza longistaminata OLONG_001081 I 0.873