Cmyd_10008652 (Chelonia mydas)
C2H2 ZF,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Cmyd_10008652 T076229_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN

NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
1.000 1.000
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG

CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
1.000 1.000
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG

CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
1.000 1.000
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
1.000 1.000
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY

RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
1.000 1.000
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN

NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
1.000 1.000
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV

BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
1.000 1.000
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB

VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
1.000 1.000
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV

BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
1.000 1.000
ZEB1
M10094_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
1.000 1.000
ZEB1
M10095_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
1.000 1.000
Zeb1
M05844_2.00
Mus musculus
NYACCTGN

NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.986 0.986
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.986 0.986
ZEB2
M10096_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10008652 C2H2 ZF 152 175
Cmyd_10008652 C2H2 ZF 182 204
Cmyd_10008652 C2H2 ZF 222 244
Cmyd_10008652 C2H2 ZF 250 271
Cmyd_10008652 Homeodomain 568 616
Cmyd_10008652 C2H2 ZF 886 908
Cmyd_10008652 C2H2 ZF 914 936
Cmyd_10008652 C2H2 ZF 942 963

Links

Other C2H2 ZF,Homeodomain family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action