Gfo_R000560 (Geospiza fortis)
C2H2 ZF,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R000560 T076241_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZFHX3
M10088_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AFP1_Q6
0.916 0.916
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000560 C2H2 ZF 614 637
Gfo_R000560 C2H2 ZF 731 755
Gfo_R000560 C2H2 ZF 1015 1039
Gfo_R000560 C2H2 ZF 1159 1182
Gfo_R000560 C2H2 ZF 1297 1322
Gfo_R000560 C2H2 ZF 1338 1360
Gfo_R000560 C2H2 ZF 1366 1389
Gfo_R000560 C2H2 ZF 1482 1506
Gfo_R000560 C2H2 ZF 1533 1557
Gfo_R000560 Homeodomain 1950 2006
Gfo_R000560 Homeodomain 2047 2103
Gfo_R000560 C2H2 ZF 2132 2153
Gfo_R000560 C2H2 ZF 2333 2355
Gfo_R000560 Homeodomain 2445 2501
Gfo_R000560 C2H2 ZF 2515 2537
Gfo_R000560 Homeodomain 2750 2806

Links

Other C2H2 ZF,Homeodomain family TFs
Other Geospiza fortis TFs

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114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action