CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R014876
(
Geospiza fortis
)
C2H2 ZF,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R014876
T076244_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN
NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
0.990
0.990
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG
CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
0.990
0.990
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG
CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
0.990
0.990
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV
BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
0.990
0.990
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY
RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
0.990
0.990
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN
NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
0.990
0.990
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV
BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
0.990
0.990
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB
VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
0.990
0.990
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV
BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
0.990
0.990
ZEB1
M10094_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
0.990
0.990
ZEB1
M10095_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
0.990
0.990
Zeb1
M05844_2.00
Mus musculus
NYACCTGN
NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.981
0.981
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV
BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.981
0.981
ZEB2
M10096_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.827
0.827
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R014876
C2H2 ZF
152
175
LTCPYCDRGYKRFTSLKEHIKYRH
Gfo_R014876
C2H2 ZF
182
204
FSCSLCSYTFAYRTQLDRHMTSH
Gfo_R014876
C2H2 ZF
222
244
FKCTECGKAFKYKHHLKEHLRIH
Gfo_R014876
C2H2 ZF
250
271
YECPNCKKRFSHSGSYSSHISS
Gfo_R014876
Homeodomain
568
616
QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA
Gfo_R014876
C2H2 ZF
886
908
YACDLCDKIFQKSSSLLRHKYEH
Gfo_R014876
C2H2 ZF
914
936
HECGICTKAFKHKHHLIEHMRLH
Gfo_R014876
C2H2 ZF
942
963
YQCDKCGKRFSHSGSYSQHMNH
Links
Other
C2H2 ZF,Homeodomain
family TFs
Other
Geospiza fortis
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSFALG00000007118
Ficedula albicollis
ENSFALG00000007118
I
1.000
Tal_R009077
Tyto alba
Tal_R009077
I
0.995
Afo_R009258
Aptenodytes forsteri
Afo_R009258
I
0.995
Aan_R013683
Calypte anna
Aan_R013683
I
0.995
ENSAPLG00000007482
Anas platyrhynchos
ENSAPLG00000007482
I
0.995
ZEB1
Gallus gallus
ENSGALG00000007260
I
0.995
ZEB1
Felis catus
ENSFCAG00000010440
I
0.990
ENSPSIG00000009469
Pelodiscus sinensis
ENSPSIG00000009469
I
0.990
ZEB1
Meleagris gallopavo
ENSMGAG00000006355
I
0.990
ZEB1
Pan troglodytes
ENSPTRG00000002404
I
0.990
ZEB1
Monodelphis domestica
ENSMODG00000007847
I
0.990
ZEB1
Sorex araneus
ENSSARG00000010985
I
0.990
ZEB1
Pteropus vampyrus
ENSPVAG00000010088
I
0.990
ZEB1
Loxodonta africana
ENSLAFG00000009663
I
0.990
ZEB1
Homo sapiens
ENSG00000148516
D
0.990
ENSNLEG00000018130
Nomascus leucogenys
ENSNLEG00000018130
I
0.990
ZEB1
Gorilla gorilla
ENSGGOG00000010090
I
0.990
ZEB1
Otolemur garnettii
ENSOGAG00000008365
I
0.990
ZEB1
Macaca mulatta
ENSMMUG00000015453
I
0.990
ENSPPYG00000002189
Pongo abelii
ENSPPYG00000002189
I
0.990
ENSPANG00000022899
Papio anubis
ENSPANG00000022899
I
0.990
ENSMPUG00000013033
Mustela putorius furo
ENSMPUG00000013033
I
0.990
Zeb1
Dipodomys ordii
ENSDORG00000007230
I
0.990
Cmyd_10008652
Chelonia mydas
Cmyd_10008652
I
0.990
Alligator_sinensis_CCG010397.1
Alligator sinensis
Alligator_sinensis_CCG010397.1
I
0.990
ENSP00000319248
Macaca fascicularis
ENSP00000319248
I
0.990
ZEB1
Canis familiaris
ENSCAFG00000004023
I
0.990
ZEB1
Bos taurus
ENSBTAG00000020053
I
0.990
ENSCSAG00000011628
Chlorocebus sabaeus
ENSCSAG00000011628
I
0.990
ZEB1
Callithrix jacchus
ENSCJAG00000013332
I
0.990
ZEB1
Dasypus novemcinctus
ENSDNOG00000016748
I
0.990
ENSAMEG00000010224
Ailuropoda melanoleuca
ENSAMEG00000010224
I
0.990
ENSSTOG00000016404
Ictidomys tridecemlineatus
ENSSTOG00000016404
I
0.990
ZEB1
Taeniopygia guttata
ENSTGUG00000001020
I
0.990
Myotis_brandtii_ZEB1_10033015
Myotis brandtii
Myotis_brandtii_ZEB1_10033015
I
0.986
Zeb1
Mus musculus
ENSMUSG00000024238
D
0.981
Zeb1
Rattus norvegicus
ENSRNOG00000017863
I
0.981
ENSLACG00000013253
Latimeria chalumnae
ENSLACG00000013253
I
0.981
ENSSHAG00000005352
Sarcophilus harrisii
ENSSHAG00000005352
I
0.976
ZEB1
Anolis carolinensis
ENSACAG00000007353
I
0.971
zeb1
Xenopus tropicalis
XB-GENE-484655
I
0.966
ABC48601
Xenopus laevis
ABC48601
I
0.962
zeb1.S
Xenopus laevis
XB-GENE-865109
I
0.962
ENSLOCG00000007239
Lepisosteus oculatus
ENSLOCG00000007239
I
0.947
zeb1b
Danio rerio
ENSDARG00000013207
I
0.909
ENSONIG00000003766
Oreochromis niloticus
ENSONIG00000003766
I
0.882
ZEB1
Cavia porcellus
ENSCPOG00000007682
I
0.865
zeb1b
Oryzias latipes
ENSORLG00000004296
I
0.865
ZEB1
Myotis lucifugus
ENSMLUG00000010631
I
0.865
ENSPFOG00000013823
Poecilia formosa
ENSPFOG00000013823
I
0.865
ENSXMAG00000005475
Xiphophorus maculatus
ENSXMAG00000005475
I
0.851
zeb1b
Gasterosteus aculeatus
ENSGACG00000001002
I
0.832
ZEB2
Tursiops truncatus
ENSTTRG00000006478
I
0.827
ZEB2
Vicugna pacos
ENSVPAG00000002128
I
0.827
ZEB2
Equus caballus
ENSECAG00000019355
I
0.827
ZEB2
Pan troglodytes
ENSPTRG00000012513
I
0.827
ENSCSAG00000016197
Chlorocebus sabaeus
ENSCSAG00000016197
I
0.827
ENSSTOG00000003811
Ictidomys tridecemlineatus
ENSSTOG00000003811
I
0.827
ZEB2
Dasypus novemcinctus
ENSDNOG00000039558
I
0.827
Zeb2
Rattus norvegicus
ENSRNOG00000004677
I
0.827
ZEB2
Cavia porcellus
ENSCPOG00000004182
I
0.827
ENSAPLG00000007687
Anas platyrhynchos
ENSAPLG00000007687
I
0.827
Myotis_brandtii_ZEB2_10007070
Myotis brandtii
Myotis_brandtii_ZEB2_10007070
I
0.827
zeb2
Xenopus tropicalis
XB-GENE-479558
I
0.827
ENSAMEG00000009337
Ailuropoda melanoleuca
ENSAMEG00000009337
I
0.827
XP_002936766
Xenopus tropicalis
XP_002936766
I
0.827
XP_002936763
Xenopus tropicalis
XP_002936763
I
0.827
ZEB2
Bos taurus
ENSBTAG00000012615
I
0.827
ENSP00000386854
Macaca fascicularis
ENSP00000386854
I
0.827
Alligator_sinensis_CCG017701.1
Alligator sinensis
Alligator_sinensis_CCG017701.1
I
0.827
ZEB2
Callithrix jacchus
ENSCJAG00000012457
I
0.827
ZEB2
Choloepus hoffmanni
ENSCHOG00000001435
I
0.827
ENSBTAP00000053646-D1
Bos grunniens
ENSBTAP00000053646-D1
I
0.827
ZEB2
Canis familiaris
ENSCAFG00000005497
I
0.827
ZEB2
Felis catus
ENSFCAG00000015532
I
0.827
ENSSHAG00000016692
Sarcophilus harrisii
ENSSHAG00000016692
I
0.827
ENSNLEG00000009020
Nomascus leucogenys
ENSNLEG00000009020
I
0.827
Zeb2
Mus musculus
ENSMUSG00000026872
I
0.827
ZEB2
Gorilla gorilla
ENSGGOG00000003186
I
0.827
ZEB2
Oryctolagus cuniculus
ENSOCUG00000027880
I
0.827
ENSGALG00000012440
Gallus gallus
ENSGALG00000012440
I
0.827
ZEB2
Loxodonta africana
ENSLAFG00000008960
I
0.827
ENSMPUG00000003620
Mustela putorius furo
ENSMPUG00000003620
I
0.827
ZEB2
Myotis lucifugus
ENSMLUG00000002019
I
0.827
ZEB2
Macaca mulatta
ENSMMUG00000016845
I
0.827
ZEB2
Monodelphis domestica
ENSMODG00000003112
I
0.827
ZEB2
Meleagris gallopavo
ENSMGAG00000012628
I
0.827
ZEB2
Ochotona princeps
ENSOPRG00000006205
I
0.827
ZEB2
Otolemur garnettii
ENSOGAG00000010020
I
0.827
ZEB2
Homo sapiens
ENSG00000169554
D
0.827
ENSPANG00000008399
Papio anubis
ENSPANG00000008399
I
0.827
ENSPPYG00000012831
Pongo abelii
ENSPPYG00000012831
I
0.827
Afo_R000542
Aptenodytes forsteri
Afo_R000542
I
0.822
Brh_R003547
Buceros rhinoceros
Brh_R003547
I
0.822
Gfo_R001123
Geospiza fortis
Gfo_R001123
I
0.822
ZEB2
Taeniopygia guttata
ENSTGUG00000011904
I
0.822
Aan_R003058
Calypte anna
Aan_R003058
I
0.822
ENSPSIG00000016788
Pelodiscus sinensis
ENSPSIG00000016788
I
0.822
ENSFALG00000013846
Ficedula albicollis
ENSFALG00000013846
I
0.822
ENSONIG00000015066
Oreochromis niloticus
ENSONIG00000015066
I
0.819
ENSPFOG00000014086
Poecilia formosa
ENSPFOG00000014086
I
0.819
ENSXMAG00000006005
Xiphophorus maculatus
ENSXMAG00000006005
I
0.819
Cmyd_10013008
Chelonia mydas
Cmyd_10013008
I
0.818
zeb2.S
Xenopus laevis
XB-GENE-865280
I
0.817
Ogr14261
Ophisaurus gracilis
Ogr14261
I
0.812
Pvit_13221
Pogona vitticeps
Pvit_13221
I
0.812
ZEB2
Anolis carolinensis
ENSACAG00000023811
I
0.812
zeb1a
Tetraodon nigroviridis
ENSTNIG00000007962
I
0.808
zeb1b
Takifugu rubripes
ENSTRUG00000001422
I
0.808
ENSAMXG00000010069
Astyanax mexicanus
ENSAMXG00000010069
I
0.806
ENSPFOG00000014121
Poecilia formosa
ENSPFOG00000014121
I
0.803
ENSGMOG00000010266
Gadus morhua
ENSGMOG00000010266
I
0.788
ENSOARG00000013971
Ovis aries
ENSOARG00000013971
I
0.779
ZEB1
Equus caballus
ENSECAG00000020102
I
0.774
zeb1a
Gasterosteus aculeatus
ENSGACG00000017648
I
0.774
ZEB1
Procavia capensis
ENSPCAG00000004425
I
0.774
zeb1a
Danio rerio
ENSDARG00000016788
I
0.774
ZEB1
Oryctolagus cuniculus
ENSOCUG00000006516
I
0.774
ENSPFOG00000016296
Poecilia formosa
ENSPFOG00000016296
I
0.769
ZEB1
Tursiops truncatus
ENSTTRG00000011798
I
0.769
ZEB1
Erinaceus europaeus
ENSEEUG00000006386
I
0.760
Pvit_04101
Pogona vitticeps
Pvit_04101
I
0.760
ENSXMAG00000002123
Xiphophorus maculatus
ENSXMAG00000002123
I
0.756
ENSTSYG00000009177
Tarsius syrichta
ENSTSYG00000009177
I
0.736
ZEB2
Pteropus vampyrus
ENSPVAG00000015557
I
0.731