Gfo_R014876 (Geospiza fortis)
C2H2 ZF,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R014876 T076244_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN

NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
0.990 0.990
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG

CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
0.990 0.990
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG

CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
0.990 0.990
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
0.990 0.990
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY

RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
0.990 0.990
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN

NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
0.990 0.990
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV

BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
0.990 0.990
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB

VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
0.990 0.990
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV

BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
0.990 0.990
ZEB1
M10094_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
0.990 0.990
ZEB1
M10095_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
0.990 0.990
Zeb1
M05844_2.00
Mus musculus
NYACCTGN

NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.981 0.981
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.981 0.981
ZEB2
M10096_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.827 0.827
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R014876 C2H2 ZF 152 175
Gfo_R014876 C2H2 ZF 182 204
Gfo_R014876 C2H2 ZF 222 244
Gfo_R014876 C2H2 ZF 250 271
Gfo_R014876 Homeodomain 568 616
Gfo_R014876 C2H2 ZF 886 908
Gfo_R014876 C2H2 ZF 914 936
Gfo_R014876 C2H2 ZF 942 963

Links

Other C2H2 ZF,Homeodomain family TFs
Other Geospiza fortis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R003058 Calypte anna Aan_R003058 I 0.822
Aan_R013683 Calypte anna Aan_R013683 I 0.995
ABC48601 Xenopus laevis ABC48601 I 0.962
Afo_R000542 Aptenodytes forsteri Afo_R000542 I 0.822
Afo_R009258 Aptenodytes forsteri Afo_R009258 I 0.995
Alligator_sinensis_CCG010397.1 Alligator sinensis Alligator_sinensis_CCG010397.1 I 0.990
Alligator_sinensis_CCG017701.1 Alligator sinensis Alligator_sinensis_CCG017701.1 I 0.827
Brh_R003547 Buceros rhinoceros Brh_R003547 I 0.822
Cmyd_10008652 Chelonia mydas Cmyd_10008652 I 0.990
Cmyd_10013008 Chelonia mydas Cmyd_10013008 I 0.818
ZEB1 Anolis carolinensis ENSACAG00000007353 I 0.971
ZEB2 Anolis carolinensis ENSACAG00000023811 I 0.812
ENSAMEG00000009337 Ailuropoda melanoleuca ENSAMEG00000009337 I 0.827
ENSAMEG00000010224 Ailuropoda melanoleuca ENSAMEG00000010224 I 0.990
ENSAMXG00000010069 Astyanax mexicanus ENSAMXG00000010069 I 0.806
ENSAPLG00000007482 Anas platyrhynchos ENSAPLG00000007482 I 0.995
ENSAPLG00000007687 Anas platyrhynchos ENSAPLG00000007687 I 0.827
ZEB2 Bos taurus ENSBTAG00000012615 I 0.827
ZEB1 Bos taurus ENSBTAG00000020053 I 0.990
ENSBTAP00000053646-D1 Bos grunniens ENSBTAP00000053646-D1 I 0.827
ZEB1 Canis familiaris ENSCAFG00000004023 I 0.990
ZEB2 Canis familiaris ENSCAFG00000005497 I 0.827
ZEB2 Choloepus hoffmanni ENSCHOG00000001435 I 0.827
ZEB2 Callithrix jacchus ENSCJAG00000012457 I 0.827
ZEB1 Callithrix jacchus ENSCJAG00000013332 I 0.990
ZEB2 Cavia porcellus ENSCPOG00000004182 I 0.827
ZEB1 Cavia porcellus ENSCPOG00000007682 I 0.865
ENSCSAG00000011628 Chlorocebus sabaeus ENSCSAG00000011628 I 0.990
ENSCSAG00000016197 Chlorocebus sabaeus ENSCSAG00000016197 I 0.827
zeb1b Danio rerio ENSDARG00000013207 I 0.909
zeb1a Danio rerio ENSDARG00000016788 I 0.774
ZEB1 Dasypus novemcinctus ENSDNOG00000016748 I 0.990
ZEB2 Dasypus novemcinctus ENSDNOG00000039558 I 0.827
Zeb1 Dipodomys ordii ENSDORG00000007230 I 0.990
ZEB2 Equus caballus ENSECAG00000019355 I 0.827
ZEB1 Equus caballus ENSECAG00000020102 I 0.774
ZEB1 Erinaceus europaeus ENSEEUG00000006386 I 0.760
ENSFALG00000007118 Ficedula albicollis ENSFALG00000007118 I 1.000
ENSFALG00000013846 Ficedula albicollis ENSFALG00000013846 I 0.822
ZEB1 Felis catus ENSFCAG00000010440 I 0.990
ZEB2 Felis catus ENSFCAG00000015532 I 0.827
ZEB1 Homo sapiens ENSG00000148516 D 0.990
ZEB2 Homo sapiens ENSG00000169554 D 0.827
zeb1b Gasterosteus aculeatus ENSGACG00000001002 I 0.832
zeb1a Gasterosteus aculeatus ENSGACG00000017648 I 0.774
ZEB1 Gallus gallus ENSGALG00000007260 I 0.995
ENSGALG00000012440 Gallus gallus ENSGALG00000012440 I 0.827
ZEB2 Gorilla gorilla ENSGGOG00000003186 I 0.827
ZEB1 Gorilla gorilla ENSGGOG00000010090 I 0.990
ENSGMOG00000010266 Gadus morhua ENSGMOG00000010266 I 0.788
ENSLACG00000013253 Latimeria chalumnae ENSLACG00000013253 I 0.981
ZEB2 Loxodonta africana ENSLAFG00000008960 I 0.827
ZEB1 Loxodonta africana ENSLAFG00000009663 I 0.990
ENSLOCG00000007239 Lepisosteus oculatus ENSLOCG00000007239 I 0.947
ZEB1 Meleagris gallopavo ENSMGAG00000006355 I 0.990
ZEB2 Meleagris gallopavo ENSMGAG00000012628 I 0.827
ZEB2 Myotis lucifugus ENSMLUG00000002019 I 0.827
ZEB1 Myotis lucifugus ENSMLUG00000010631 I 0.865
ZEB1 Macaca mulatta ENSMMUG00000015453 I 0.990
ZEB2 Macaca mulatta ENSMMUG00000016845 I 0.827
ZEB2 Monodelphis domestica ENSMODG00000003112 I 0.827
ZEB1 Monodelphis domestica ENSMODG00000007847 I 0.990
ENSMPUG00000003620 Mustela putorius furo ENSMPUG00000003620 I 0.827
ENSMPUG00000013033 Mustela putorius furo ENSMPUG00000013033 I 0.990
Zeb1 Mus musculus ENSMUSG00000024238 D 0.981
Zeb2 Mus musculus ENSMUSG00000026872 I 0.827
ENSNLEG00000009020 Nomascus leucogenys ENSNLEG00000009020 I 0.827
ENSNLEG00000018130 Nomascus leucogenys ENSNLEG00000018130 I 0.990
ENSOARG00000013971 Ovis aries ENSOARG00000013971 I 0.779
ZEB1 Oryctolagus cuniculus ENSOCUG00000006516 I 0.774
ZEB2 Oryctolagus cuniculus ENSOCUG00000027880 I 0.827
ZEB1 Otolemur garnettii ENSOGAG00000008365 I 0.990
ZEB2 Otolemur garnettii ENSOGAG00000010020 I 0.827
ENSONIG00000003766 Oreochromis niloticus ENSONIG00000003766 I 0.882
ENSONIG00000015066 Oreochromis niloticus ENSONIG00000015066 I 0.819
ZEB2 Ochotona princeps ENSOPRG00000006205 I 0.827
zeb1b Oryzias latipes ENSORLG00000004296 I 0.865
ENSP00000319248 Macaca fascicularis ENSP00000319248 I 0.990
ENSP00000386854 Macaca fascicularis ENSP00000386854 I 0.827
ENSPANG00000008399 Papio anubis ENSPANG00000008399 I 0.827
ENSPANG00000022899 Papio anubis ENSPANG00000022899 I 0.990
ZEB1 Procavia capensis ENSPCAG00000004425 I 0.774
ENSPFOG00000013823 Poecilia formosa ENSPFOG00000013823 I 0.865
ENSPFOG00000014086 Poecilia formosa ENSPFOG00000014086 I 0.819
ENSPFOG00000014121 Poecilia formosa ENSPFOG00000014121 I 0.803
ENSPFOG00000016296 Poecilia formosa ENSPFOG00000016296 I 0.769
ENSPPYG00000002189 Pongo abelii ENSPPYG00000002189 I 0.990
ENSPPYG00000012831 Pongo abelii ENSPPYG00000012831 I 0.827
ENSPSIG00000009469 Pelodiscus sinensis ENSPSIG00000009469 I 0.990
ENSPSIG00000016788 Pelodiscus sinensis ENSPSIG00000016788 I 0.822
ZEB1 Pan troglodytes ENSPTRG00000002404 I 0.990
ZEB2 Pan troglodytes ENSPTRG00000012513 I 0.827
ZEB1 Pteropus vampyrus ENSPVAG00000010088 I 0.990
ZEB2 Pteropus vampyrus ENSPVAG00000015557 I 0.731
Zeb2 Rattus norvegicus ENSRNOG00000004677 I 0.827
Zeb1 Rattus norvegicus ENSRNOG00000017863 I 0.981
ZEB1 Sorex araneus ENSSARG00000010985 I 0.990
ENSSHAG00000005352 Sarcophilus harrisii ENSSHAG00000005352 I 0.976
ENSSHAG00000016692 Sarcophilus harrisii ENSSHAG00000016692 I 0.827
ENSSTOG00000003811 Ictidomys tridecemlineatus ENSSTOG00000003811 I 0.827
ENSSTOG00000016404 Ictidomys tridecemlineatus ENSSTOG00000016404 I 0.990
ZEB1 Taeniopygia guttata ENSTGUG00000001020 I 0.990
ZEB2 Taeniopygia guttata ENSTGUG00000011904 I 0.822
zeb1a Tetraodon nigroviridis ENSTNIG00000007962 I 0.808
zeb1b Takifugu rubripes ENSTRUG00000001422 I 0.808
ENSTSYG00000009177 Tarsius syrichta ENSTSYG00000009177 I 0.736
ZEB2 Tursiops truncatus ENSTTRG00000006478 I 0.827
ZEB1 Tursiops truncatus ENSTTRG00000011798 I 0.769
ZEB2 Vicugna pacos ENSVPAG00000002128 I 0.827
ENSXMAG00000002123 Xiphophorus maculatus ENSXMAG00000002123 I 0.756
ENSXMAG00000005475 Xiphophorus maculatus ENSXMAG00000005475 I 0.851
ENSXMAG00000006005 Xiphophorus maculatus ENSXMAG00000006005 I 0.819
Gfo_R001123 Geospiza fortis Gfo_R001123 I 0.822
Myotis_brandtii_ZEB1_10033015 Myotis brandtii Myotis_brandtii_ZEB1_10033015 I 0.986
Myotis_brandtii_ZEB2_10007070 Myotis brandtii Myotis_brandtii_ZEB2_10007070 I 0.827
Ogr14261 Ophisaurus gracilis Ogr14261 I 0.812
Pvit_04101 Pogona vitticeps Pvit_04101 I 0.760
Pvit_13221 Pogona vitticeps Pvit_13221 I 0.812
Tal_R009077 Tyto alba Tal_R009077 I 0.995
zeb2 Xenopus tropicalis XB-GENE-479558 I 0.827
zeb1 Xenopus tropicalis XB-GENE-484655 I 0.966
zeb1.S Xenopus laevis XB-GENE-865109 I 0.962
zeb2.S Xenopus laevis XB-GENE-865280 I 0.817
XP_002936763 Xenopus tropicalis XP_002936763 I 0.827
XP_002936766 Xenopus tropicalis XP_002936766 I 0.827