CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Bos taurus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSBTAG00000011162
T076434_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.936
0.936
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.711
0.711
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.711
0.711
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.711
0.711
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000014826
MADF
363
425
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHVLEPCAFFEDMD
ENSBTAP00000014826
MADF
513
584
ILHETRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSBTAP00000014826
C2H2 ZF
777
799
SKCSVCGKCFGRSRSLVRHQRIH
ENSBTAP00000014826
C2H2 ZF
805
827
FKCLDCGKSFNDSSNFGAHQRIH
ENSBTAP00000014826
C2H2 ZF
833
855
YRCGECGKCFSQSSSLIIHQRTH
ENSBTAP00000014826
C2H2 ZF
861
883
YQCGDCGRSFTNSSHFSAHRRVH
ENSBTAP00000014826
C2H2 ZF
889
911
YKCVDCEKSFNNCTRFREHRRVH
ENSBTAP00000014826
C2H2 ZF
917
939
YGCSQCGRRFSKSSVLTKHREVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Bos taurus
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy