CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Bos taurus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSBTAG00000014478
T076435_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.955
0.955
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.955
0.955
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.955
0.955
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.722
0.722
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000019251
MADF
260
329
SQPEFYEALRNCHRNSQVYGAVAERLREFGFLRTLEQCRTKFKGLQKNYRKVKSGHPPETCPFFEEMEAL
ENSBTAP00000019251
MADF
425
492
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSBTAP00000019251
C2H2 ZF
676
698
YKCADCGKSFSRSARLIRHRRIH
ENSBTAP00000019251
C2H2 ZF
704
726
YQCLDCGKSFRDSSNFITHRRIH
ENSBTAP00000019251
C2H2 ZF
732
754
YECGECGKRFNQSSSLIIHQRTH
ENSBTAP00000019251
C2H2 ZF
760
782
YQCEECGKSFNNSSHFSAHRRIH
ENSBTAP00000019251
C2H2 ZF
788
810
HVCPDCGKSFSKSSDLRAHHRTH
ENSBTAP00000019251
C2H2 ZF
816
838
YGCQDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Bos taurus
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy