CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Canis familiaris
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSCAFG00000012056
T076436_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M01165_2.00
Homo sapiens
WAAYYCGRWT
AWYCGRRTTW
PBM
Lambert et al.(2019)
pTH11268
0.968
0.992
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.989
0.989
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.989
0.989
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.989
0.989
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000017749
MADF
262
329
TEFYEALRNCHRNSQVYGAVAERLREYGFFRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSCAFP00000017749
MADF
425
492
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSCAFP00000017762
MADF
262
329
TEFYEALRNCHRNSQVYGAVAERLREYGFFRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSCAFP00000017762
MADF
425
492
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSCAFP00000017762
C2H2 ZF
678
700
YKCADCGKSFSRSARLIRHRRIH
ENSCAFP00000017762
C2H2 ZF
706
728
YKCLDCGKSFRDSSNFITHRRIH
ENSCAFP00000017762
C2H2 ZF
734
756
YQCGECGKRFNQSSSLIIHQRTH
ENSCAFP00000017762
C2H2 ZF
762
784
YQCEECGKSFNNSSHFSAHRRIH
ENSCAFP00000017762
C2H2 ZF
790
812
HVCPDCGKSFSKSSDLRAHHRTH
ENSCAFP00000017762
C2H2 ZF
818
840
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Canis familiaris
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy