CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Choloepus hoffmanni
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSCHOG00000013904
T076439_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.962
0.962
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.734
0.734
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.734
0.734
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.734
0.734
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000012316
MADF
249
311
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHVLEPCAFFEDMD
ENSCHOP00000012316
MADF
403
470
TRFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSCHOP00000012316
C2H2 ZF
664
686
YKCSVCGKCFGRSRSLIRHQRIH
ENSCHOP00000012316
C2H2 ZF
692
714
FKCLECGKSFNDSSNFGAHQRIH
ENSCHOP00000012316
C2H2 ZF
720
742
YRCRECGKCFSQSSSLIIHQRTH
ENSCHOP00000012316
C2H2 ZF
748
770
YQCGECGKSFTNSSHFSAHRRVH
ENSCHOP00000012316
C2H2 ZF
776
798
YKCVDCEKSFNNCTRFREHRRTH
ENSCHOP00000012316
C2H2 ZF
804
826
YGCAQCSKRFTKSSVLMKHREVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Choloepus hoffmanni
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy