ZKSCAN2 (Callithrix jacchus)
C2H2 ZF,MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg) 		IPR007087
IPR006578 		ENSCJAG00000020749 T076441_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZKSCAN2
M07562_2.00 		Homo sapiens
RRRRRMMAC
GTKTYYYYY		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData 		0.992 0.992
ZSCAN29
M04384_2.00 		Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK		 SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX 		0.752 0.752
ZSCAN29
M08271_2.00 		Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR		 ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE 		0.752 0.752
ZSCAN29
M04385_2.00 		Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK		 SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002203 MADF 361 422
ENSCJAP00000002203 MADF 515 582
ENSCJAP00000002203 C2H2 ZF 775 797
ENSCJAP00000002203 C2H2 ZF 803 825
ENSCJAP00000038596 MADF 157 218
ENSCJAP00000038596 MADF 311 378
ENSCJAP00000038596 C2H2 ZF 571 593
ENSCJAP00000038596 C2H2 ZF 599 621
ENSCJAP00000038596 C2H2 ZF 627 649
ENSCJAP00000038596 C2H2 ZF 655 677
ENSCJAP00000038596 C2H2 ZF 683 705
ENSCJAP00000038596 C2H2 ZF 711 733
ENSCJAP00000038599 MADF 361 422
ENSCJAP00000038599 MADF 515 582
ENSCJAP00000038599 C2H2 ZF 775 797
ENSCJAP00000038599 C2H2 ZF 803 825
ENSCJAP00000038599 C2H2 ZF 831 853
ENSCJAP00000038599 C2H2 ZF 859 881
ENSCJAP00000038599 C2H2 ZF 887 909
ENSCJAP00000038599 C2H2 ZF 915 937

Links

Other C2H2 ZF,MADF family TFs
Other Callithrix jacchus TFs

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65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action