ZSCAN29 (Cavia porcellus)
C2H2 ZF,MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSCPOG00000001782 T076442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN

NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.911 0.911
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN

NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.911 0.911
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN

NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.911 0.911
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000001613 MADF 260 329
ENSCPOP00000001613 MADF 426 493
ENSCPOP00000001613 C2H2 ZF 679 701
ENSCPOP00000001613 C2H2 ZF 707 729
ENSCPOP00000001613 C2H2 ZF 735 757
ENSCPOP00000001613 C2H2 ZF 763 785
ENSCPOP00000001613 C2H2 ZF 791 813
ENSCPOP00000001613 C2H2 ZF 819 841

Links

Other C2H2 ZF,MADF family TFs
Other Cavia porcellus TFs

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45 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action