CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Cavia porcellus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSCPOG00000001782
T076442_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.911
0.911
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.911
0.911
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.911
0.911
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000001613
MADF
260
329
SQTELYEALRNCHRNSQVYGAVAERLQEYGFLRTLEQCRTKFKGLQKSYRKVKSGYPPETCPFFEEMEAL
ENSCPOP00000001613
MADF
426
493
TQFYEALQNCHRNSQLYGAVAERLWEHGFFRTPEQCRTKFKSLQTSYRKVKSGQARDTCPFFEEMDAL
ENSCPOP00000001613
C2H2 ZF
679
701
YKCTDCGKSFSRSARLIRHRRIH
ENSCPOP00000001613
C2H2 ZF
707
729
YKCLDCGKSFRDSSNFITHRRIH
ENSCPOP00000001613
C2H2 ZF
735
757
YQCVECGKRFNQSSSLIIHQRTH
ENSCPOP00000001613
C2H2 ZF
763
785
YQCEDCGKSFNNSSHCSAHRRIH
ENSCPOP00000001613
C2H2 ZF
791
813
HVCPDCGKSFSKSSDLRAHHRTH
ENSCPOP00000001613
C2H2 ZF
819
841
YGCHDCGKCFTKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Cavia porcellus
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy