CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Dasypus novemcinctus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSDNOG00000018427
T076446_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M01165_2.00
Homo sapiens
WAAYYCGRWT
AWYCGRRTTW
PBM
Lambert et al.(2019)
pTH11268
0.971
0.992
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.985
0.985
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.985
0.985
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.985
0.985
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.743
0.743
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000014306
MADF
263
330
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEDMEAL
ENSDNOP00000014306
MADF
427
494
TQFYEALRNCHRNSQLYGAVAERLWDYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSDNOP00000020228
MADF
263
330
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEDMEAL
ENSDNOP00000020228
MADF
427
494
TQFYEALRNCHRNSQLYGAVAERLWDYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSDNOP00000020228
C2H2 ZF
679
701
YKCADCGKSFSRSARLIRHQRIH
ENSDNOP00000020228
C2H2 ZF
707
729
YKCLDCGKSFRDSSNFITHRRIH
ENSDNOP00000020228
C2H2 ZF
735
757
YQCGECGKRFNQSSSLIIHQRTH
ENSDNOP00000020228
C2H2 ZF
763
785
YQCEECGKSFNNSSHFSAHRRIH
ENSDNOP00000020228
C2H2 ZF
791
813
HVCPDCGKSFSKSSDLRAHHRTH
ENSDNOP00000020228
C2H2 ZF
819
841
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Dasypus novemcinctus
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy