CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Equus caballus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSECAG00000012289
T076448_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.985
0.985
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.985
0.985
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.985
0.985
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000010068
MADF
261
328
TEFYEALRNCHRNSQVYGAVAERLRKYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSECAP00000010068
MADF
424
491
TQFYEALQNCHRNSQLYGAVAERLWEHGFLRTAEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSECAP00000010068
C2H2 ZF
677
699
YKCADCGKSFSRSARLIRHRRIH
ENSECAP00000010068
C2H2 ZF
705
727
YKCLDCGKSFRDSSNFITHRRIH
ENSECAP00000010068
C2H2 ZF
733
755
YQCGECGKRFNQSSSLIIHQRTH
ENSECAP00000010068
C2H2 ZF
761
783
YQCEECGKSFNNSSHFSAHRRIH
ENSECAP00000010068
C2H2 ZF
789
811
HVCPDCGKSFSKSSDLRAHHRTH
ENSECAP00000010068
C2H2 ZF
817
839
YGCHDCGKCFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Equus caballus
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy