CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Erinaceus europaeus
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSEEUG00000006869
T076449_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.936
0.936
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.936
0.936
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.936
0.936
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000006253
MADF
155
223
QTEFYEALQNSHRNSQVYGAVSERLQEYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPDSCPFFKEMEAL
ENSEEUP00000006253
MADF
320
387
TQFYEALRNCHRNSQLYGAVAERLWKYGFLRTAEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSEEUP00000006253
C2H2 ZF
573
595
YKCADCGKSFSRSARLIRHRRIH
ENSEEUP00000006253
C2H2 ZF
601
623
YKCLDCGKSFRDSSNFITHRRIH
ENSEEUP00000006253
C2H2 ZF
629
651
YQCGECGKRFNQSSSLIIHQRTH
ENSEEUP00000006253
C2H2 ZF
657
679
YQCEECGKSFNNSSHFSAHRRIH
ENSEEUP00000006253
C2H2 ZF
685
707
HVCPVCGKSFSKSSDLRIHHRTH
ENSEEUP00000006253
C2H2 ZF
713
735
YGCHDCGKSFSKSSVLNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Erinaceus europaeus
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy