CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZSCAN29
(
Homo sapiens
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSG00000140265
T076454_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M01165_2.00
Homo sapiens
WAAYYCGRWT
AWYCGRRTTW
PBM
Lambert et al.(2019)
pTH11268
(Direct)
(Direct)
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
(Direct)
(Direct)
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.735
0.735
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01165_2.00
MADF
52
119
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
M01165_2.00
MADF
215
282
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000380174
MADF
263
330
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSP00000380174
MADF
426
493
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSP00000380174
C2H2 ZF
678
700
YKCADCGKSFSRSARLIRHRRIH
ENSP00000380174
C2H2 ZF
706
728
YKCLDCGKSFRDSSNFITHRRIH
ENSP00000380174
C2H2 ZF
734
756
YQCGECGKCFNQSSSLIIHQRTH
ENSP00000380174
C2H2 ZF
762
784
YQCEECGKSFNNSSHFSAHRRIH
ENSP00000380174
C2H2 ZF
790
812
HVCPDCGKSFSKSSDLRAHHRTH
ENSP00000380174
C2H2 ZF
818
840
YGCHDCGKCFSKSSALNKHGEIH
ENSP00000456089
MADF
262
329
TEFYEALRNCHRNSQVYGAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSP00000456089
MADF
425
492
TQFYEALRNCHRNSQLYGAVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSP00000456883
C2H2 ZF
288
310
YKCADCGKSFSRSARLIRHRRIH
ENSP00000456883
C2H2 ZF
316
338
YKCLDCGKSFRDSSNFITHRRIH
ENSP00000456883
C2H2 ZF
344
366
YQCGECGKCFNQSSSLIIHQRTH
ENSP00000456883
C2H2 ZF
372
394
YQCEECGKSFNNSSHFSAHRRIH
ENSP00000456883
C2H2 ZF
400
422
HVCPDCGKSFSKSSDLRAHHRTH
ENSP00000456883
C2H2 ZF
428
450
YGCHDCGKCFSKSSALNKHGEIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Homo sapiens
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy